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@ShadeLab

ShadeLab

Projects from Ashley Shade's research group at Michigan State University

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  1. ConditionallyRareTaxa ConditionallyRareTaxa Public

    R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities

    R 20 3

  2. PAPER_Shade_CurrOpinMicro PAPER_Shade_CurrOpinMicro Public

    Containing script for investigating core microbiota

    PostScript 6 7

  3. PAPER_LeeSorensen_ISMEJ_2017 PAPER_LeeSorensen_ISMEJ_2017 Public

    Workflows and R scripts for Lee and Sorensen et al

    R 5 13

  4. NetworkAnalysisWorkflows NetworkAnalysisWorkflows Public

    Here is a repo for workflows and notes for Network analyses of microbial data

    R 3 1

  5. MetaAnalysis_MicrobesInTime_ISMEJ2013 MetaAnalysis_MicrobesInTime_ISMEJ2013 Public

    R scripts used for calculations in Shade et al. 2013 ISMEJ

    R 3

  6. PAPER_Dunivin_meta_arsenic PAPER_Dunivin_meta_arsenic Public

    Toolkit for detecting arsenic resistance genes in nucleotide and amino acid sequences. A meta-analysis of arsenic resistance genes in soil genomes (RefSoil+) and metagenomes

    PostScript 3 4

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