ShadeLab
- 32 followers
- East Lansing, MI
- http://ashley17061.wix.com/shadelab
Popular repositories Loading
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ConditionallyRareTaxa
ConditionallyRareTaxa PublicR scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities
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PAPER_Shade_CurrOpinMicro
PAPER_Shade_CurrOpinMicro PublicContaining script for investigating core microbiota
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PAPER_LeeSorensen_ISMEJ_2017
PAPER_LeeSorensen_ISMEJ_2017 PublicWorkflows and R scripts for Lee and Sorensen et al
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NetworkAnalysisWorkflows
NetworkAnalysisWorkflows PublicHere is a repo for workflows and notes for Network analyses of microbial data
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MetaAnalysis_MicrobesInTime_ISMEJ2013
MetaAnalysis_MicrobesInTime_ISMEJ2013 PublicR scripts used for calculations in Shade et al. 2013 ISMEJ
R 3
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PAPER_Dunivin_meta_arsenic
PAPER_Dunivin_meta_arsenic PublicToolkit for detecting arsenic resistance genes in nucleotide and amino acid sequences. A meta-analysis of arsenic resistance genes in soil genomes (RefSoil+) and metagenomes
Repositories
- Drought_multigeneration_study_common_bean Public
Sequence processing and analysis for multigeneration drought experiment
ShadeLab/Drought_multigeneration_study_common_bean’s past year of commit activity - Rhizosphere_assembly_Common_Bean Public
Analysis for the rhizoplane and rhizosphere assembly project on common bean
ShadeLab/Rhizosphere_assembly_Common_Bean’s past year of commit activity - Seed_transmission_Common_Bean Public
Sequence processing and analysis for the Common Bean seed endophyte transmission manuscript
ShadeLab/Seed_transmission_Common_Bean’s past year of commit activity - Centralia_phages_Barnett Public
ShadeLab/Centralia_phages_Barnett’s past year of commit activity - Centralia_RNA_DNA_multiyear Public
ShadeLab/Centralia_RNA_DNA_multiyear’s past year of commit activity - Common-bean_Rhizobia_genomes Public
ShadeLab/Common-bean_Rhizobia_genomes’s past year of commit activity