remove bondgraphs from docs and fix SBMLImporter link

docs/src/index.md

@@ -47,11 +47,10 @@ etc).
 - [SciMLSensitivity.jl](https://github.com/SciML/SciMLSensitivity.jl) can be used to compute local sensitivities of functions containing forward model simulations.
 
 #### [Features of packages built upon Catalyst](@id doc_index_features_other_packages)
-- Catalyst [`ReactionSystem`](@ref)s can be [imported from SBML files](@ref model_file_import_export_sbml) via [SBMLImporter.jl](https://github.com/SciML/SBMLImporter.jl) and [SBMLToolkit.jl](https://github.com/SciML/SBMLToolkit.jl), and [from BioNetGen .net files](@ref model_file_import_export_sbml_rni_net) and various stoichiometric matrix network representations using [ReactionNetworkImporters.jl](https://github.com/SciML/ReactionNetworkImporters.jl).
+- Catalyst [`ReactionSystem`](@ref)s can be [imported from SBML files](@ref model_file_import_export_sbml) via [SBMLImporter.jl](https://github.com/sebapersson/SBMLImporter.jl) and [SBMLToolkit.jl](https://github.com/SciML/SBMLToolkit.jl), and [from BioNetGen .net files](@ref model_file_import_export_sbml_rni_net) and various stoichiometric matrix network representations using [ReactionNetworkImporters.jl](https://github.com/SciML/ReactionNetworkImporters.jl).
 - [MomentClosure.jl](https://github.com/augustinas1/MomentClosure.jl) allows generation of symbolic ModelingToolkit `ODESystem`s that represent moment closure approximations to moments of the Chemical Master Equation, from reaction networks defined in Catalyst.
 - [FiniteStateProjection.jl](https://github.com/kaandocal/FiniteStateProjection.jl) allows the construction and numerical solution of Chemical Master Equation models from reaction networks defined in Catalyst.
 - [DelaySSAToolkit.jl](https://github.com/palmtree2013/DelaySSAToolkit.jl) can augment Catalyst reaction network models with delays, and can simulate the resulting stochastic chemical kinetics with delays models.
-- [BondGraphs.jl](https://github.com/jedforrest/BondGraphs.jl), a package for constructing and analyzing bond graphs models, which can take Catalyst models as input.
 
 ## [How to read this documentation](@id doc_index_documentation)
 The Catalyst documentation is separated into sections describing Catalyst's various features. Where appropriate, some sections will also give advice on best practices for various modeling workflows, and provide links with further reading. Each section also contains a set of relevant example workflows. Finally, the [API](@ref api) section contains a list of all functions exported by Catalyst (as well as descriptions of them and their inputs and outputs).

docs/src/model_simulation/examples/periodic_events_simulation.md

@@ -78,6 +78,3 @@ If we directly plot $l$'s value, it will be too small (compared to $X$ and $Xᴾ
 @unpack X, Xᴾ, l = circadian_model
 plot(sol; idxs = [X, Xᴾ, 150*l], labels = ["X" "Xᴾ" "Light amplitude"])
 ```
-
-!!! note
-    If you wish to reproduce this in a jump simulation, remember to make appropriate modifications (like using `setu` instead of `setp`).