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Adds balancing for reactions involving compounds #657

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wants to merge 18 commits into from
Closed

Adds balancing for reactions involving compounds #657

wants to merge 18 commits into from

Commits on Aug 2, 2023

  1. Adds balancing code and tests

    @LalitChauhan56
    LalitChauhan56 committed Aug 2, 2023
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Commits on Aug 4, 2023

  1. Update to master

    @LalitChauhan56
    LalitChauhan56 committed Aug 4, 2023
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  2. Merge branch 'master' into balance

    @LalitChauhan56
    LalitChauhan56 committed Aug 4, 2023
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  3. Update tests

    @LalitChauhan56
    LalitChauhan56 committed Aug 4, 2023
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  4. Merge branch 'SciML:master' into balance

    @LalitChauhan56
    LalitChauhan56 authored Aug 4, 2023
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Commits on Aug 8, 2023

  1. Change file name

    @LalitChauhan56
    LalitChauhan56 committed Aug 8, 2023
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  2. Update Catalyst.jl

    @LalitChauhan56
    LalitChauhan56 committed Aug 8, 2023
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Commits on Aug 9, 2023

  1. Add tests, modify balancing logic

    @LalitChauhan56
    LalitChauhan56 committed Aug 9, 2023
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Commits on Aug 17, 2023

  1. Rational approach from start to end 

    Adds backward_substitution function, eliminates rounding completely and avoids floating point numbers
    @LalitChauhan56
    LalitChauhan56 committed Aug 17, 2023
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  2. Separate balancing test file

    @LalitChauhan56
    LalitChauhan56 committed Aug 17, 2023
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Commits on Aug 18, 2023

  1. Change filename back to previous name

    @LalitChauhan56
    LalitChauhan56 committed Aug 18, 2023
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  2. Update Catalyst.jl

    @LalitChauhan56
    LalitChauhan56 committed Aug 18, 2023
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  3. Final renaming file

    @LalitChauhan56
    LalitChauhan56 committed Aug 18, 2023
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  4. Update Catalyst.jl

    @LalitChauhan56
    LalitChauhan56 committed Aug 18, 2023
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Commits on Aug 22, 2023

  1. Add more tests, optimize logic

    @LalitChauhan56
    LalitChauhan56 committed Aug 22, 2023
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Commits on Aug 29, 2023

  1. Use nullspace to get stoichiometries

    @LalitChauhan56
    LalitChauhan56 committed Aug 29, 2023
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  2. Fix test

    @LalitChauhan56
    LalitChauhan56 committed Aug 29, 2023
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Commits on Aug 30, 2023

  1. Return a vector of Reactions when the nullspace dimension is greater … 

    …than 1
    @LalitChauhan56
    LalitChauhan56 committed Aug 30, 2023
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