Fix Isolate Cells CLI script.

SchapiroLabor · Jul 31, 2024 · 0c456a5 · 0c456a5
1 parent 185c680
commit 0c456a5
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/mask2bbox/scripts/isolate_cells.py b/mask2bbox/scripts/isolate_cells.py
@@ -75,7 +75,7 @@ def get_arguments():
                         action="store", type=str, required=False, default=None,
                         help="Path to the output file with the bounding boxes.")
     output.add_argument("-sm", "--sample", dest="sample",
-                        action="store", type=int, required=False, default=5,
+                        action="store", type=int, required=False, default=0,
                         help="Working the same to `-osc` but randomly select n=5 cells to explore parameters.")
 
     tool = parser.add_argument_group(
@@ -162,8 +162,8 @@ def main():
 
         # Sample images if needed
         if args.sample > 0:
-            lg.debug(f"Saving sample bounding boxes             = {args.output_sample}")
-            mask_boxes = mask_boxes.sample(5)
+            lg.debug(f"Saving sample bounding boxes             = {args.sample}")
+            mask_boxes = mask_boxes.sample(args.sample)
 
         # Extract and save the single cell crops
         mask_boxes.extract(resize_factors=rf[mask_boxes.idx()],

diff --git a/mask2bbox/version.py b/mask2bbox/version.py
@@ -1 +1 @@
-__version__ = "0.0.21"
+__version__ = "0.0.22"
diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "mask2bbox"
-version = "0.0.21"
+version = "0.0.22"
 authors = [
   { name="Miguel A. Ibarra-Arellano", email="[email protected]"},
 ]