0.0.1

What's Changed

• Refactoring of the gene_info dataset by @mfazza in #1
• Data Release 2.5.0 by @mfazza in #2
• Adding dynamic login by @mfazza in #3
• adding testing file by @mfazza in #4
• AG-500: adding documentation by @mfazza in #5
• AG-621 by @mfazza in #6
• AG-500 by @mfazza in #7
• 2.6.5 by @mfazza in #8
• AG-500: found a problem with overall scores by @mfazza in #9
• Ag 557 by @mfazza in #10
• AG-605 by @mfazza in #11
• AG-560 and AG-557: TMT distribution data and renaming of cor_p_val by @thomasyu888 in #13
• [AG-698] Updates to develop branch by @thomasyu888 in #14
• Adjust pipelines to be executed via gh-actions by @thomasyu888 in #15
• Update documentation by @thomasyu888 in #16
• Add dockerfile by @thomasyu888 in #18
• Dev to main by @thomasyu888 in #17
• AG-780 Update configs & README by @JessterB in #19
• Merge main to dev to sync branches by @JessterB in #20
• AG-701 - disable TREAT-AD score processing by @JessterB in #21
• AG-701: Disable TREAT-AD scores in test_config.yaml by @JessterB in #22
• Temporarily reenable TREAT-AD score processing in test-config only by @JessterB in #24
• Disable TREAT-AD score processing by @JessterB in #25
• AG-826: Update & reenable overall_scores processing by @JessterB in #26
• AG-827: Update and reenable distribution_data processing by @JessterB in #27
• AG-825 ADT: Reconfigure TMT proteomics to use new source files by @j-hendrickson-sage in #28
• AG-825 by @JessterB in #29
• Add in public dockerhub and fix some markdown issues by @thomasyu888 in #32
• Update Dockerfile by @BWMac in #33
• AG-915: pin source file versions for nextflowtower validation by @JessterB in #34
• AG-915: Pin iGAP source file version for nft validation by @JessterB in #35
• [IBCDPE-411]/test extract by @BWMac in #36
• [IBCDPE-395]/adds ci pytest by @BWMac in #38
• Ag 469 update ensembl ID list by @jaclynbeck-sage in #30
• Notebook to update GWAS list by @jaclynbeck-sage in #31
• AG-888: Pin source file versions and clean up configs by @JessterB in #39
• AG-826: Revert neuropath handling changes until we are ready for it by @JessterB in #41
• AG-492: Update config.yaml to process new source file versions by @JessterB in #42
• Removed unnecessary results.json creation and upload to synapse by @jaclynbeck-sage in #43
• AG-889: Process new version of scores source data by @JessterB in #44
• Modified nest_fields to allow dropping columns from the nested dictionary by @jaclynbeck-sage in #45
• Update load functions by @jaclynbeck-sage in #46
• [IBCDPE-414] - test process tests by @BWMac in #48
• AG-932/AG-958: Add biodomains dataset by @JessterB in #47
• [IBCDPE-416] - Fixes/Re-Writes Tests for utils.py by @BWMac in #50
• Deprecate processing with github actions by @thomasyu888 in #49
• [IBCDPE-413]/test load.py by @BWMac in #51
• [IBCDPE-415] transform tests by @BWMac in #52

New Contributors

• @mfazza made their first contribution in #1
• @thomasyu888 made their first contribution in #13
• @j-hendrickson-sage made their first contribution in #28
• @BWMac made their first contribution in #33
• @jaclynbeck-sage made their first contribution in #30

Full Changelog: https://github.com/Sage-Bionetworks/agora-data-tools/commits/0.0.1