Update SpleenSeg_Pretrained-4_27.ipynb

fixed formatting by removing h4 format
STRIDES · Mar 8, 2024 · 7284fbf · 7284fbf
1 parent e2f7d4b
commit 7284fbf
Showing 1 changed file with 23 additions and 29 deletions.
diff --git a/notebooks/SpleenLiverSegmentation/SpleenSeg_Pretrained-4_27.ipynb b/notebooks/SpleenLiverSegmentation/SpleenSeg_Pretrained-4_27.ipynb
@@ -51,7 +51,7 @@
    "id": "f59ba435",
    "metadata": {},
    "source": [
-    "##### Uncomment below to install all dependencies"
+    "Uncomment below to install all dependencies."
    ]
   },
   {
@@ -156,7 +156,7 @@
    "id": "6f523cbf",
    "metadata": {},
    "source": [
-    "#### Running a pretrained model"
+    "### Running a pretrained model"
    ]
   },
   {
@@ -174,7 +174,7 @@
    "id": "e9f3e5f3",
    "metadata": {},
    "source": [
-    "#### Create the directory for storing data"
+    "Create the directory for storing data"
    ]
   },
   {
@@ -194,7 +194,7 @@
    "id": "38463a18",
    "metadata": {},
    "source": [
-    "#### Download the public dataset"
+    "### Download the public dataset"
    ]
   },
   {
@@ -217,7 +217,7 @@
    "id": "fae7c51b",
    "metadata": {},
    "source": [
-    "#### Create Date Dictionaries and separate files from training and validation"
+    "### Create Date Dictionaries and separate files from training and validation"
    ]
   },
   {
@@ -243,7 +243,7 @@
    "id": "974fc5aa",
    "metadata": {},
    "source": [
-    "#### Define your transformations for training and validation"
+    "### Define your transformations for training and validation"
    ]
   },
   {
@@ -327,7 +327,7 @@
    "id": "ba3c7695",
    "metadata": {},
    "source": [
-    "#### Visualize Image and Label (example)"
+    "### Visualize Image and Label (example)"
    ]
   },
   {
@@ -358,9 +358,9 @@
    "id": "f45ba707",
    "metadata": {},
    "source": [
-    "#### Use a dataloader to load files\n",
-    "    - Ability to use LMDB (Lightning Memory-Mapped Database)\n",
-    "    - Here is where transforms take place and they happen on both images and labels"
+    "### Use a dataloader to load files\n",
+    "Ability to use LMDB (Lightning Memory-Mapped Database)\n",
+    " - Here is where transforms take place and they happen on both images and labels"
    ]
   },
   {
@@ -400,7 +400,7 @@
    "id": "a77e7856",
    "metadata": {},
    "source": [
-    "#### Now we want to download the pretrained model from NVIDIA"
+    "### Download the pretrained model from NVIDIA"
    ]
   },
   {
@@ -476,8 +476,7 @@
    "id": "39910557",
    "metadata": {},
    "source": [
-    "### This will be our test file we will view for reference\n",
-    " - Here we see how our initial model appears to perform"
+    "This will be our test file we will view for reference. Here we see how our initial model appears to perform."
    ]
   },
   {
@@ -496,7 +495,7 @@
    "id": "2544a774",
    "metadata": {},
    "source": [
-    "#### We use a sliding window technique to search the image"
+    "We use a sliding window technique to search the image."
    ]
   },
   {
@@ -566,8 +565,7 @@
    "id": "2f60e5b5",
    "metadata": {},
    "source": [
-    "#### Using just the pretrained model, it appears we are performing pretty well\n",
-    "    - We can now continue to train with our data using the NVIDIA models initial weights"
+    "Using just the pretrained model, it appears we are performing pretty well! We can now continue to train with our data using the NVIDIA models initial weights"
    ]
   },
   {
@@ -576,8 +574,7 @@
    "metadata": {},
    "source": [
     "## Training\n",
-    "#### Without a GPU, training can take a while\n",
-    "#### Recommend skipping next three cells and load in model"
+    " Without a GPU, training can take a while, we recommend skipping next three cells and load in model.",
    ]
   },
   {
@@ -700,7 +697,7 @@
    "id": "4ff0035d",
    "metadata": {},
    "source": [
-    "#### The model shows that it has improved fairly quickly over just 25 epochs"
+    "The model shows that it has improved fairly quickly over just 25 epochs."
    ]
   },
   {
@@ -709,7 +706,7 @@
    "metadata": {},
    "source": [
     "## Inference\n",
-    "#### Without GPU skip to here to load previously trained best model (without a gpu the training will take a while)"
+    "Without GPU skip to here to load previously trained best model (without a gpu the training will take a while)."
    ]
   },
   {
@@ -727,7 +724,7 @@
    "id": "fab5b4b9",
    "metadata": {},
    "source": [
-    "#### With the model loaded let's see if much has changed for our example image"
+    "With the model loaded let's see if much has changed for our example image."
    ]
   },
   {
@@ -798,15 +795,15 @@
    "id": "6606bce2",
    "metadata": {},
    "source": [
-    "#### We see not much has changed, which is a good sign for how well the NVIDIA model performs out of the box."
+    "We see not much has changed, which is a good sign for how well the NVIDIA model performs out of the box."
    ]
   },
   {
    "cell_type": "markdown",
    "id": "5cfd20c6",
    "metadata": {},
    "source": [
-    "#### Here is the final image of our Spleen"
+    "Here is the final image of our Spleen!"
    ]
   },
   {
@@ -827,7 +824,7 @@
    "id": "6030d210",
    "metadata": {},
    "source": [
-    "#### Feel free to play around in this notebook or download it and use it where a GPU is accessible"
+    "Feel free to play around in this notebook or download it and use it where a GPU is accessible."
    ]
   },
   {
@@ -836,8 +833,7 @@
    "metadata": {},
    "source": [
     "## Additional Exercise: Use liver segmentation in addition to spleen\n",
-    "    - Just need to load liver segmentation from NVIDIA\n",
-    "    - While we can't train this model, since we don't have training data, we can use it as a rough estimate"
+    "Her we are loading in liver segmentation from NVIDIA. While we can't train this model, since we don't have training data, we can use it as a rough estimate."
    ]
   },
   {
@@ -973,9 +969,7 @@
    "id": "af1169b6",
    "metadata": {},
    "source": [
-    "#### Continue including more models found at the NGC Catalog: \n",
-    "#### https://catalog.ngc.nvidia.com/models\n",
-    "##### - Recommend filtering by 'CT' "
+    "Continue including more models found at the NGC Catalog: https://catalog.ngc.nvidia.com/models. We recommend filtering by 'CT'.",
    ]
   },
   {