Semantic mappings for OPTIMADE Structure #649
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| name: CI - Tests | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - 'main' | |
| - 'push-action/**' # Allow pushing to protected branches (using CasperWA/push-protected) | |
| jobs: | |
| basic-tests: | |
| name: External | |
| uses: SINTEF/ci-cd/.github/workflows/[email protected] | |
| with: | |
| # General setup | |
| install_extras: "[dev]" | |
| # pre-commit | |
| run_pre-commit: false | |
| # pylint & safety | |
| python_version_pylint_safety: "3.9" | |
| run_pylint: false | |
| run_safety: true | |
| # ID: 70612 | |
| # Package: Jinja2 | |
| # Has been disputed by the maintainer and multiple third parties. | |
| # For more information see: https://github.com/advisories/GHSA-f6pv-j8mr-w6rr | |
| safety_options: | | |
| --ignore=70612 | |
| # Build dist | |
| python_version_package: "3.9" | |
| build_libs: flit | |
| build_cmd: flit build | |
| # Build documentation | |
| python_version_docs: "3.9" | |
| package_dirs: oteapi_optimade | |
| full_docs_dirs: "models" | |
| pytest: | |
| name: pytest (${{ matrix.os[1] }}-py${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os[0] }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: | |
| - ["ubuntu-latest", "linux"] | |
| - ["windows-latest", "windows"] | |
| steps: | |
| - name: Checkout oteapi-optimade | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip | |
| pip install -U setuptools wheel flit | |
| pip install -e .[test] | |
| - name: Test with pytest | |
| run: pytest -vvv --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| if: github.repository == 'SINTEF/oteapi-optimade' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| env_vars: OS,PYTHON | |
| flags: local | |
| env: | |
| OS: ${{ matrix.os[0] }} | |
| PYTHON: ${{ matrix.python-version }} | |
| pytest-real-backend: | |
| runs-on: ubuntu-latest | |
| name: pytest-real backend | |
| env: | |
| OTEAPI_PORT: 8080 | |
| OPTIMADE_PORT: 5000 | |
| OTEAPI_PREFIX: "/api/v1" | |
| services: | |
| redis: | |
| image: redis:latest | |
| volumes: | |
| - redis-persist:/data | |
| ports: | |
| - "6379:6379" | |
| optimade: | |
| image: ghcr.io/materials-consortia/optimade:develop | |
| ports: | |
| - "5000:5000" # the first value should equal `OPTIMADE_PORT` | |
| env: | |
| OPTIMADE_BASE_URL: "http://localhost:5000" # port value should equal `OPTIMADE_PORT` | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.9" | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install -U pip | |
| pip install -U setuptools wheel flit | |
| pip install -e .[dev] | |
| - name: Run OTEAPI Service | |
| run: | | |
| docker pull ghcr.io/emmc-asbl/oteapi:${DOCKER_OTEAPI_VERSION} | |
| docker run \ | |
| --env "OTEAPI_REDIS_TYPE=redis" \ | |
| --env "OTEAPI_REDIS_HOST=localhost" \ | |
| --env "OTEAPI_REDIS_PORT=6379" \ | |
| --env "OTEAPI_PREFIX=${OTEAPI_PREFIX}" \ | |
| --network "host" \ | |
| --volume "${PWD}:/oteapi-optimade" \ | |
| --entrypoint "" \ | |
| ghcr.io/emmc-asbl/oteapi:${DOCKER_OTEAPI_VERSION} \ | |
| /bin/bash -c "pip install -v -e /oteapi-optimade && ./entrypoint.sh" & | |
| .github/utils/wait_for_it.sh localhost:${OTEAPI_PORT} -t 240 | |
| sleep 5 | |
| env: | |
| DOCKER_OTEAPI_VERSION: 'latest' | |
| - name: Run end-2-end tests | |
| run: python .github/utils/end2end_test.py |