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Merge to deploy#120

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luciansmith merged 44 commits intodeploySED-ML/KiSAO:deployfrom devSED-ML/KiSAO:devCopy head branch name to clipboardDec 2, 2024

+1,129-427

Commits

Commits on Oct 10, 2021

• Updated compiled documentation [Skip CI]

  

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Commits on Mar 27, 2022

• feat: started new minor version

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• feat: added algorithm concepts for eQuilibrator

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• feat: copied descriptions of ECM and MDF from the Metabolic Pathway Analysis software

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Commits on Mar 29, 2022

• feat: refined categorization of MPA methods

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• Merge pull request #107 from SED-ML/equilibrator

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• chore: updated CodeCov action to v2

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Commits on May 19, 2023

• Add two new terms, change organization.

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• Fix pip at 23.0.1

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• sphinxprettysearchresults is broken; remove for now.

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• sphinxprettysearchresults is broken; remove for now.

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Commits on May 22, 2023

• Changes from Matthias

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Commits on May 24, 2023

• Merge pull request #110 from SED-ML/implement-harmony-suggestions

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• Update for release

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• Merge pull request #111 from SED-ML/update-for-release

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Commits on Jun 6, 2023

• A handful of changes:

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• Remove extra '.

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Commits on Jun 20, 2023

• Update getting pandoc.

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• Authentication was broken; try without.

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• Pin pip to 23.0.1

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• Pin pip to 23.0.0

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• Update to use $GITHUB_OUTPUT

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• Print the tag_hash.

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• Merge pull request #113 from SED-ML/update-organization

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Commits on Jun 28, 2023

• Make 407 the root-finding steady state algorithm.

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• Update version number.

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• Merge pull request #114 from SED-ML/steadystate-reorg

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Commits on Dec 8, 2023

• Add 698, 'particle coordinates'.

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Commits on Mar 13, 2024

• Create new 'DAE Solver' category; put IDA-like things in it.

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• Add functionality in libkisao for DAE solvers.

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Commits on Mar 14, 2024

• KINSOL isn't a DAE solver.

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• Tag everything that's DAE as additionally being ODE.

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• Tag KINSOL as ODE solver again.

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• Dropping DAE/ODE labels from many things.

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• Update version numbers and changelog.

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• Merge pull request #115 from SED-ML/create-dae-solver

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• Typo fix.

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• Add instructions about tagging for release.

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Commits on Oct 10, 2024

• Update updating.md

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• Fix lint.

  luciansmith

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• Merge branch 'dev' of https://github.com/SED-ML/KiSAO into dev

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Commits on Oct 30, 2024

• Fix dates.

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Commits on Nov 22, 2024

• Fix for #117

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Commits on Dec 2, 2024

• Merge pull request #119 from SED-ML/deploy

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