feat: added algorithm parameters for libRoadRunner/CVODE

SED-ML · Aug 12, 2021 · e2ab67b · e2ab67b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,8 @@
 # Changelog
 
+## 2.25 (OWL 2)
+- Added algorithm parameters for libRoadRunner/CVODE
+
 ## 2.24 (OWL 2)
 - Added algorithm for Resource Balance Analysis
 - Aligned Identifiers.org URIs to http:// rather than https://

diff --git a/kisao.owl b/kisao.owl
@@ -19,7 +19,7 @@
         <rdfs:label xml:lang="en">Kinetic Simulation Algorithm Ontology (KiSAO)</rdfs:label>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://co.mbine.org/standards/kisao</rdfs:seeAlso>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/pubmed/22027554</rdfs:seeAlso>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.23</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.25</owl:versionInfo>
         <skos:definition xml:lang="en">The Kinetic Simulation Algorithm Ontology (KiSAO) classifies algorithms available for the simulation and analysis of models in biology, and their characteristics and the parameters required for their use.</skos:definition>
     </owl:Ontology>
 
@@ -14245,6 +14245,44 @@ This method only involves evaluations of f. This method is suitable for non-stif
 
 
 
+    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000670 -->
+
+    <owl:Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000670">
+        <rdfs:subClassOf rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000243"/>
+        <dc:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-08-07</dc:created>
+        <dc:creator xml:lang="en">JRK</dc:creator>
+        <isImplementedIn rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/tellurium</isImplementedIn>
+        <rdfs:label xml:lang="en">Use multiple steps</rdfs:label>
+        <skos:definition xml:lang="en">Whether to perform a multiple time step simulation.</skos:definition>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000670"/>
+        <owl:annotatedProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#isImplementedIn"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/tellurium</owl:annotatedTarget>
+        <rdfs:comment xml:lang="en">tellurium</rdfs:comment>
+    </owl:Axiom>
+
+
+
+    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000671 -->
+
+    <owl:Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000671">
+        <rdfs:subClassOf rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000243"/>
+        <dc:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-08-07</dc:created>
+        <dc:creator xml:lang="en">JRK</dc:creator>
+        <isImplementedIn rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/tellurium</isImplementedIn>
+        <rdfs:label xml:lang="en">use stiff method</rdfs:label>
+        <skos:definition xml:lang="en">Specifies whether the integrator attempts to solve stiff equations.</skos:definition>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000671"/>
+        <owl:annotatedProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#isImplementedIn"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/biosimulators/tellurium</owl:annotatedTarget>
+        <rdfs:comment xml:lang="en">tellurium</rdfs:comment>
+    </owl:Axiom>
+
+
+
     <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000800 -->
 
     <owl:Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000800">

diff --git a/kisao_full.owl b/kisao_full.owl
@@ -19,7 +19,7 @@
         <rdfs:comment xml:lang="en">Kinetic Simulation Algorithm Ontology (full version, containing deprecated classes)</rdfs:comment>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://co.mbine.org/standards/kisao</rdfs:seeAlso>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/pubmed/22027554</rdfs:seeAlso>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.24</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">2.25</owl:versionInfo>
         <skos:definition xml:lang="en">The Kinetic Simulation Algorithm Ontology (KiSAO) classifies algorithms available for the simulation and analysis of models in biology, and their characteristics and the parameters required for their use.</skos:definition>
     </owl:Ontology>
 

diff --git a/libkisao/python/kisao/_version.py b/libkisao/python/kisao/_version.py
@@ -1 +1 @@
-__version__ = '2.24'
+__version__ = '2.25'