Update for networkx version 3 SCMSUITE-10090 SO107

SCM-NV · Nov 19, 2024 · e48be41 · e48be41
1 parent 7fb4b40
commit e48be41
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/mol/identify.py b/mol/identify.py
@@ -321,7 +321,7 @@ def get_graph(mol, dic, level=1):
         matrix *= identifiers.reshape((nats, 1))
 
         # Create the graph
-        graph = networkx.from_numpy_matrix(matrix)
+        graph = networkx.from_numpy_array(matrix)
 
         return graph
 

diff --git a/mol/molecule.py b/mol/molecule.py
@@ -1570,7 +1570,7 @@ def locate_rings_networkx(self):
         matrix = self.bond_matrix()
         matrix = matrix.astype(np.int32)
         matrix[matrix > 0] = 1
-        graph = networkx.from_numpy_matrix(matrix)
+        graph = networkx.from_numpy_array(matrix)
         rings = networkx.cycle_basis(graph)
         return rings