update example scripts sed calls

COPYING

@@ -1,7 +1,7 @@
 License
 =======
 
-Copyright (c)2014 Southern California Earthquake Center (SCEC) and the
+Copyright (c)2019 Southern California Earthquake Center (SCEC) and the
 University of Southern California (USC). This copyright applies to the UCVM 
 codebase as a whole, or any individual distributed applications. The 
 individual contributions of government employees, which may be identified 
@@ -269,7 +269,7 @@ Apache 2.0 License
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright 2014 Southern California Earthquake Center and the
+   Copyright 2019 Southern California Earthquake Center and the
    University of Southern California
 
    Licensed under the Apache License, Version 2.0 (the "License");

ChangeLog

@@ -1,4 +1,8 @@
 
+2019-06-01  Mei-Hui Su <[email protected]>
+
+* Added z-range to plotting capability for external elygtl 
+
 2019-04-15  Mei-Hui Su <[email protected]>
 
 * Added new plotting capability of using elevation in addition to depth 

aclocal.m4

@@ -1037,3 +1037,4 @@ AC_SUBST([am__tar])
 AC_SUBST([am__untar])
 ]) # _AM_PROG_TAR
 
+m4_include([m4/AX_PROG_CC_MPI.m4])

examples/programs/mesh/run_ucvm2mesh_mpi_cvmh.sh

@@ -22,7 +22,7 @@ SCRATCH=./scratch
 cp ${BIN_DIR}/ucvm2mesh_mpi .
 cp ${CONF_DIR}/ucvm.conf .
 
-sed 's ${SCRATCH} '$SCRATCH' ' small_cvmh.conf_template  > small_cvmh.conf
+sed 's ${CONF_DIR} '$CONF_DIR' ' small_cvmh.conf_template | sed 's ${SCRATCH} '$SCRATCH' ' > small_cvmh.conf
 
 salloc -N 2 --ntasks=2 --time=00:20:00 srun --ntasks=2 -v --mpi=pmi2 ./ucvm2mesh_mpi -f small_cvmh.conf
 

examples/programs/mesh/run_ucvm2mesh_mpi_cvmsi.sh

@@ -22,7 +22,8 @@ SCRATCH=./scratch
 cp ${BIN_DIR}/ucvm2mesh_mpi .
 cp ${CONF_DIR}/ucvm.conf .
 
-sed 's ${SCRATCH} '$SCRATCH' ' small_cvmsi.conf_template > small_cvmsi.conf
+sed 's ${CONF_DIR} '$CONF_DIR' ' small_cvmsi.conf_template | sed 's ${SCRATCH} '$SCRATCH' ' > small_cvmsi.conf
+
 
 salloc -N 4 --ntasks=8 --time=00:30:00 srun --ntasks=8 -v --mpi=pmi2 ${BIN_DIR}/ucvm2mesh_mpi -f small_cvmsi.conf
 

examples/programs/mesh/run_ucvm2mesh_mpi_layer_cvms.sh

@@ -22,7 +22,7 @@ rm -rf la_habra_cvms.grid la_habra_cvms.media la_habra_cvms.conf ucvm2mesh_mpi_l
 cp ${BIN_DIR}/ucvm2mesh_mpi_layer .
 cp ${CONF_DIR}/ucvm.conf .
 
-sed 's ${SCRATCH} '$SCRATCH' ' la_habra_cvms.conf_template > la_habra_cvms.conf
+sed 's ${CONF_DIR} '$CONF_DIR' ' la_habra_cvms.conf_template | sed 's ${SCRATCH} '$SCRATCH' '  > la_habra_cvms.conf
 
 salloc -N 2 --ntasks=4 --time=00:30:00 srun --ntasks=4 -v --mpi=pmi2 ./ucvm2mesh_mpi_layer -f la_habra_cvms.conf -l 1 -c 3
 salloc --ntasks=4 --time=00:30:00 srun --ntasks=4 -v --mpi=pmi2 ./ucvm2mesh_mpi_layer -f la_habra_cvms.conf -l 4 -c 3 

examples/programs/mesh/run_ucvm2mesh_mpi_layer_cvmsi.sh

@@ -22,7 +22,7 @@ rm -rf la_habra_cvmsi.grid la_habra_cvmsi.media la_habra_cvmsi.conf ucvm2mesh_mp
 cp ${BIN_DIR}/ucvm2mesh_mpi_layer .
 cp ${CONF_DIR}/ucvm.conf .
 
-sed 's ${SCRATCH} '$SCRATCH' ' la_habra_cvmsi.conf_template > la_habra_cvmsi.conf
+sed 's ${CONF_DIR} '$CONF_DIR' ' la_habra_cvmsi.conf_template | sed 's ${SCRATCH} '$SCRATCH' ' > la_habra_cvmsi.conf
 
 salloc -N 2 --ntasks=4 --time=00:30:00 srun --ntasks=4 -v --mpi=pmi2 ./ucvm2mesh_mpi_layer -f la_habra_cvmsi.conf -l 1 -c 3
 salloc --ntasks=4 --time=00:30:00 srun --ntasks=4 -v --mpi=pmi2 ./ucvm2mesh_mpi_layer -f la_habra_cvmsi.conf -l 4 -c 3