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Update BULDING.md for the yi-src-multi#1

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Commits on Jun 15, 2016

• Removed deprecated code from PipelineManager

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Commits on Jun 18, 2016

• Bug fixes

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• Bug fix

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• Bug fix

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Commits on Jun 20, 2016

• Bug fixes

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• Removed free on PìpelineComponentBase.cpp:46 due to SIGABRT. Memory cleanning will be performed later.

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• Still buggy code. Attempting to get the output id to retrieve the workflow output.

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• Output Argument on workflow generator now has updated id from the stage argument from witch the

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Commits on Jun 21, 2016

• Bug Fix

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Commits on Jun 25, 2016

• Bug fix

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Commits on Jul 13, 2016

• Bug Fix:

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• Bug Fix:

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Commits on Aug 2, 2016

• Expanded the PCB class to have a list of ReusableTask.

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• Included fine-grain merging algorithm. Fine-grain merging algorithm still

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• Segmentation now implements ReusableTask. All serialization

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• Updated Segmentation constructor to generate the task desc list and added

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Commits on Aug 4, 2016

• All base structure (so far) for task reuse implemented and tested.

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• Bug fix: system wasn't working with more than a value for the same variable.

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Commits on Aug 8, 2016

• Serialization bug fixed:

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Commits on Aug 10, 2016

• Stage fine-grain merging partially working:

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• Basic structure for task reuse now working:

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Commits on Aug 17, 2016

• Task reuse structure implemented and working with one

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• Task reuse partially working:

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• Bug fix:

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Commits on Aug 22, 2016

• Reimplemented Task merging. Now FGO is fully functional with naive merging strategies.

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Commits on Aug 30, 2016

• Task code generator implemented. Still need to do Stage generation.

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• Source code generation implementation finished.

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Commits on Aug 31, 2016

• Generated code working with any np value but still buggy:

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Commits on Sep 5, 2016

• Bug fix:

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Commits on Sep 7, 2016

• Stoer-Wagner min-cut algorithm implemented.

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• Fixed cut weight calculation and namespace interface to min-cut module.

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Commits on Sep 8, 2016

• Integration of mincut with PipelineManager 50% complete.

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• Mincut algorithm fully integrated and, as far as it was tested, working.

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• Milenium bug fixed

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Commits on Sep 13, 2016

• Non-recursive version of new merge-cut algorithm.

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• Recursive version of merge-cut algorithm implemented and partially working (at least one case where it don't work)

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• Getting rid of memory leaks.

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Commits on Sep 14, 2016

• All memory leaks fixed. The execution part of the application, however, is broken now due to double frees and/or args/rts deleted to early.

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• Application fully working.

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• Recursive montecarlo implementation created.

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• Recursive Montecarlo algorithm implemented and tested.

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Commits on Sep 19, 2016

• Changed intertask arguments to smart pointers in order to fix the mem leaking and keep the system working.

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• Started new values input implementation.

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Commits on Sep 21, 2016

• Dakota input file added and partial implementation on PipelineManager.

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Commits on Sep 22, 2016

• Stage creation implemented. Still need to add interstage arguments.

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Commits on Sep 23, 2016

• Workflows generation almost complete:

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Commits on Sep 24, 2016

• The workflows are executing, but the manager is finishing before all workflows

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Commits on Sep 26, 2016

• Bug Fixes:

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• Fixed np > 2 bug.

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• Changed the format of the dakota input

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• Fixed non-enforced task dependency bug:

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• Stage-task code generation:

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• Finished and tested the stage-task code generator.

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• Fixed the workflow outputs and added a file output to the fine grain merging solution.

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Commits on Sep 27, 2016

• Fixed the missing stage on merge bug.

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• Used OpenMP to speed the merging part of the montecarlo recursive cut algorithm.

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• Fixed all (serious) memory leaks.

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Commits on Sep 29, 2016

• Changed MPI_Init strategy

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Commits on Oct 7, 2016

• Added outputs for testing purposes.

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Commits on Oct 8, 2016

• Fixed the test output files naming.

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Commits on Oct 10, 2016

• Most severe memory leaks fixed.

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• Merge branch 'FGO' of https://github.com/SBU-BMI/region-templates into FGO

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Commits on Oct 11, 2016

• First implementation of reuse tree finished

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• First reuse tree optimization (now ~30% reuse).

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• Removed cout's form merging algorithm

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Commits on Oct 12, 2016

• Implemented and tested the second pass of pruning operation.

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Commits on Oct 13, 2016

• Fixed the application args input.

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• Fixed application file outputs to ease testing.

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• A new interface to access all FGO merging algorithms was created

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• Reuse-tree merging now has the option to turn the double-prune optimization on and off.

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Commits on Oct 18, 2016

• Added stage shuffling option.

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• Added a 'no coarse grain merging' option.

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Commits on Feb 7, 2017

• Added profiling cout's.

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Commits on Feb 21, 2017

• Worker time profiler added to stdout.

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• Merge branch 'FGO-bucket-star' of github.com:SBU-BMI/region-templates into FGO-bucket-star

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• Dependency test.

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Commits on Feb 22, 2017

• More manager profiling.

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Commits on Apr 7, 2017

• Removed unused cout's and started workflow-clustered stages generation algorithm, against the stage-clustered generation model.

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Commits on Apr 10, 2017

• Solved the '1 RT per pipeline' problem. Found out that the dependencies between stages aren't being enforced. Reproductible by profiling WORKER_PROFILER with clustered stage generation.

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Commits on Apr 11, 2017

• The dependency problem isn't really a problem. Just don't use clustered stage generation. Explanation on PipelineManager.cpp:947

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Commits on Apr 17, 2017

• Update BULDING.md for the yi-src-multi

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Commits on Apr 19, 2017

• TaskSegmentation5 memory leak fixed.

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Commits on Apr 20, 2017

• Fixed the Diff memory leak

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Commits on Apr 21, 2017

• Fixed Segmentation DDR2D memory leaks (updateDR would make new DDR2Ds without deleting the old ones).

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• Some further memory leaks fixed on workflow generation.

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Commits on Apr 26, 2017

• Reworked the input agruments to something somewhat more professional.

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Commits on Apr 27, 2017

• Reworked the directory structure of FGO and cleaned some PipelineManager code.

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• Updated the stage generator to match the current needs and fixed a minor bug of non-matching of tasks.

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• Forgot to add the jsoncpp source and to update the generator makefile.

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• Merge pull request #3 from SBU-BMI/FGO-bucket-star

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Commits on Mar 9, 2018

• Merge remote-tracking branch 'sbu/master'

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