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Rostlab

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  1. predictprotein-docker predictprotein-docker Public

    Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, in…

    Dockerfile 13 7

  2. bio_embeddings bio_embeddings Public

    Repository containing bio_embeddings resources

  3. EAT EAT Public

    Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to …

    Python 28 7

  4. VESPA VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Python 30 6

  5. TMbed TMbed Public

    Transmembrane proteins predicted through Language Model embeddings

  6. ProtTrans ProtTrans Public

    Forked from agemagician/ProtTrans

    ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

    Jupyter Notebook 10 1

Repositories

Showing 10 of 55 repositories
  • bindPredict Public

    Prediction of binding residues for metal ions, nucleic acids, and small molecules.

    Rostlab/bindPredict’s past year of commit activity
    Python 32 MIT 9 1 0 Updated Dec 16, 2024
  • goPredSim Public
    Rostlab/goPredSim’s past year of commit activity
    Python 44 MIT 4 0 0 Updated Dec 2, 2024
  • TMvisDB Public archive

    TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).

    Rostlab/TMvisDB’s past year of commit activity
    Jupyter Notebook 0 AFL-3.0 0 0 0 Updated Nov 13, 2024
  • mlschool Public

    Website for the Machine Learning Summerschool for Toxinologists

    Rostlab/mlschool’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 6, 2024
  • RostSpace Public
    Rostlab/RostSpace’s past year of commit activity
    Python 2 AGPL-3.0 1 2 0 Updated Oct 17, 2024
  • VESPA Public

    VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

    Rostlab/VESPA’s past year of commit activity
    Python 30 AGPL-3.0 6 0 0 Updated Mar 4, 2024
  • smiles-cl Public
    Rostlab/smiles-cl’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Aug 15, 2023
  • blog Public
    Rostlab/blog’s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Aug 3, 2023
  • LambdaPP Public
    Rostlab/LambdaPP’s past year of commit activity
    JavaScript 4 AFL-3.0 0 0 0 Updated May 12, 2023
  • ppi_utils Public
    Rostlab/ppi_utils’s past year of commit activity
    Python 0 AFL-3.0 0 0 0 Updated Mar 14, 2023
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