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@sr320
sr320 committed Aug 21, 2024
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8 changes: 5 additions & 3 deletions _quarto.yml
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Expand Up @@ -120,9 +120,11 @@ website:

format:
html:
theme: united
css: styles.css
toc: true
theme:
light: flatly
dark: darkly
#css: styles.css
#toc: true

editor: visual

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388 changes: 160 additions & 228 deletions docs/courses.html
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266 changes: 40 additions & 226 deletions docs/dei.html
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123 changes: 120 additions & 3 deletions docs/index.html
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Expand Up @@ -38,10 +38,12 @@
<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<script src="site_libs/bootstrap/bootstrap.min.js"></script>
<link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="site_libs/bootstrap/bootstrap-dark.min.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
Expand Down Expand Up @@ -104,7 +106,6 @@
<script src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script>
<script src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-chtml-full.js" type="text/javascript"></script>

<link rel="stylesheet" href="styles.css">
<link rel="alternate" type="application/rss+xml" title="robertslab.info" href="index.xml"></head>

<body class="nav-sidebar docked nav-fixed">
Expand Down Expand Up @@ -245,6 +246,7 @@
<a href="./calendar.html" rel="" title="Calendar" class="quarto-navigation-tool px-1" aria-label="Calendar"><i class="bi bi-calendar-week"></i></a>
<a href="./contact.html" rel="" title="Contact Us" class="quarto-navigation-tool px-1" aria-label="Contact Us"><i class="bi bi-envelope-paper"></i></a>
<a href="./index.xml" rel="" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-rss"></i></a>
<a href="" class="quarto-color-scheme-toggle quarto-navigation-tool px-1" onclick="window.quartoToggleColorScheme(); return false;" title="Toggle dark mode"><i class="bi"></i></a>
</div>
<div id="quarto-search" class="" title="Search"></div>
</div> <!-- /container-fluid -->
Expand Down Expand Up @@ -575,6 +577,121 @@ <h5 class="no-anchor card-title listing-title">
}
}
toggleBodyColorPrimary();
const disableStylesheet = (stylesheets) => {
for (let i=0; i < stylesheets.length; i++) {
const stylesheet = stylesheets[i];
stylesheet.rel = 'prefetch';
}
}
const enableStylesheet = (stylesheets) => {
for (let i=0; i < stylesheets.length; i++) {
const stylesheet = stylesheets[i];
stylesheet.rel = 'stylesheet';
}
}
const manageTransitions = (selector, allowTransitions) => {
const els = window.document.querySelectorAll(selector);
for (let i=0; i < els.length; i++) {
const el = els[i];
if (allowTransitions) {
el.classList.remove('notransition');
} else {
el.classList.add('notransition');
}
}
}
const toggleColorMode = (alternate) => {
// Switch the stylesheets
const alternateStylesheets = window.document.querySelectorAll('link.quarto-color-scheme.quarto-color-alternate');
manageTransitions('#quarto-margin-sidebar .nav-link', false);
if (alternate) {
enableStylesheet(alternateStylesheets);
for (const sheetNode of alternateStylesheets) {
if (sheetNode.id === "quarto-bootstrap") {
toggleBodyColorMode(sheetNode);
}
}
} else {
disableStylesheet(alternateStylesheets);
toggleBodyColorPrimary();
}
manageTransitions('#quarto-margin-sidebar .nav-link', true);
// Switch the toggles
const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
for (let i=0; i < toggles.length; i++) {
const toggle = toggles[i];
if (toggle) {
if (alternate) {
toggle.classList.add("alternate");
} else {
toggle.classList.remove("alternate");
}
}
}
// Hack to workaround the fact that safari doesn't
// properly recolor the scrollbar when toggling (#1455)
if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
manageTransitions("body", false);
window.scrollTo(0, 1);
setTimeout(() => {
window.scrollTo(0, 0);
manageTransitions("body", true);
}, 40);
}
}
const isFileUrl = () => {
return window.location.protocol === 'file:';
}
const hasAlternateSentinel = () => {
let styleSentinel = getColorSchemeSentinel();
if (styleSentinel !== null) {
return styleSentinel === "alternate";
} else {
return false;
}
}
const setStyleSentinel = (alternate) => {
const value = alternate ? "alternate" : "default";
if (!isFileUrl()) {
window.localStorage.setItem("quarto-color-scheme", value);
} else {
localAlternateSentinel = value;
}
}
const getColorSchemeSentinel = () => {
if (!isFileUrl()) {
const storageValue = window.localStorage.getItem("quarto-color-scheme");
return storageValue != null ? storageValue : localAlternateSentinel;
} else {
return localAlternateSentinel;
}
}
let localAlternateSentinel = 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
// Read the current dark / light value
let toAlternate = !hasAlternateSentinel();
toggleColorMode(toAlternate);
setStyleSentinel(toAlternate);
};
// Ensure there is a toggle, if there isn't float one in the top right
if (window.document.querySelector('.quarto-color-scheme-toggle') === null) {
const a = window.document.createElement('a');
a.classList.add('top-right');
a.classList.add('quarto-color-scheme-toggle');
a.href = "";
a.onclick = function() { try { window.quartoToggleColorScheme(); } catch {} return false; };
const i = window.document.createElement("i");
i.classList.add('bi');
a.appendChild(i);
window.document.body.appendChild(a);
}
// Switch to dark mode if need be
if (hasAlternateSentinel()) {
toggleColorMode(true);
} else {
toggleColorMode(false);
}
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {
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19 changes: 19 additions & 0 deletions docs/notebooks.qmd
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@@ -0,0 +1,19 @@
---
title: "Lab Notebooks"
title-block-banner: true
toc: true
---

| Person | Notebook | Commitment |
|------------------|-----------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------|
| Steven Roberts | [sr320.github.io](https://sr320.github.io/) | ![GitHub last commit](https://img.shields.io/github/last-commit/sr320/sr320.github.io) |
| Sam White | [robertslab.github.io](https://robertslab.github.io/sams-notebook/) | ![GitHub last commit](https://img.shields.io/github/last-commit/RobertsLab/sams-notebook) |
| Matt George | [mattgeorgephd.github.io](https://mattgeorgephd.github.io/notebook/) | ![GitHub last commit](https://img.shields.io/github/last-commit/mattgeorgephd/mattgeorgephd.github.io) |
| Aspen Coyle | [aspencoyle.github.io](https://aspencoyle.github.io) | ![GitHub last commit](https://img.shields.io/github/last-commit/afcoyle/afcoyle.github.io) |
| Ariana Huffmyer | [ahuffmyer.github.io](https://ahuffmyer.github.io/ASH_Putnam_Lab_Notebook/) | ![GitHub last commit](https://img.shields.io/github/last-commit/AHuffmyer/ASH_Putnam_Lab_Notebook) |
| Chris Mantegna | [chrismantegna.github.io](https://chrismantegna.github.io/cmlabsite/) | ![Github last commit](https://img.shields.io/github/last-commit/ChrisMantegna.github.io/cmlabsite) |
| Zach Bengtsson | [zbengt.github.io](https://zbengt.github.io/notebook/) | ![Github last commit](https://img.shields.io/github/last-commit/zbengt/zbengt.github.io) |
| Celeste Valdivia | [valeste.github.io](https://valeste.github.io/tough-tunicates/) | ![GitHub last commit](https://img.shields.io/github/last-commit/valeste/tough-tunicates) |
| Larken Root | [larkenr.github.io](https://larkenr.github.io/labnotebook/) | ![Github last commit](https://img.shields.io/github/last-commit/larkenr/larkenr.github.io/labnotebook/) |
| Grace Crandall | [grace-ac.github.io](https://grace-ac.github.io/) | ![GitHub last commit](https://img.shields.io/github/last-commit/grace-ac/grace-ac.github.io) |
| Kathleen Durkin | [shedurkin.github.io](https://shedurkin.github.io/Roberts-LabNotebook/) | ![GitHub last commit](https://img.shields.io/github/last-commit/shedurkin/Roberts-LabNotebook) |
125 changes: 121 additions & 4 deletions docs/posts.html
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Expand Up @@ -38,10 +38,12 @@
<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<link href="site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<script src="site_libs/bootstrap/bootstrap.min.js"></script>
<link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="site_libs/bootstrap/bootstrap-dark.min.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
Expand Down Expand Up @@ -105,7 +107,6 @@
<script src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script>
<script src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-chtml-full.js" type="text/javascript"></script>

<link rel="stylesheet" href="styles.css">
<link rel="alternate" type="application/rss+xml" title="robertslab.info" href="posts.xml"></head>

<body class="nav-sidebar docked nav-fixed">
Expand Down Expand Up @@ -246,6 +247,7 @@
<a href="./calendar.html" rel="" title="Calendar" class="quarto-navigation-tool px-1" aria-label="Calendar"><i class="bi bi-calendar-week"></i></a>
<a href="./contact.html" rel="" title="Contact Us" class="quarto-navigation-tool px-1" aria-label="Contact Us"><i class="bi bi-envelope-paper"></i></a>
<a href="./index.xml" rel="" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-rss"></i></a>
<a href="" class="quarto-color-scheme-toggle quarto-navigation-tool px-1" onclick="window.quartoToggleColorScheme(); return false;" title="Toggle dark mode"><i class="bi"></i></a>
</div>
<div id="quarto-search" class="" title="Search"></div>
</div> <!-- /container-fluid -->
Expand All @@ -255,7 +257,7 @@
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar,#quarto-sidebar-glass" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<i class="bi bi-layout-text-sidebar-reverse"></i>
</button>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./posts.html">News and Updates</a></li></ol></nav>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item">News and Updates</li></ol></nav>
<a class="flex-grow-1" role="button" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar,#quarto-sidebar-glass" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
</a>
<button type="button" class="btn quarto-search-button" aria-label="" onclick="window.quartoOpenSearch();">
Expand Down Expand Up @@ -1197,6 +1199,121 @@ <h5 class="no-anchor card-title listing-title">
}
}
toggleBodyColorPrimary();
const disableStylesheet = (stylesheets) => {
for (let i=0; i < stylesheets.length; i++) {
const stylesheet = stylesheets[i];
stylesheet.rel = 'prefetch';
}
}
const enableStylesheet = (stylesheets) => {
for (let i=0; i < stylesheets.length; i++) {
const stylesheet = stylesheets[i];
stylesheet.rel = 'stylesheet';
}
}
const manageTransitions = (selector, allowTransitions) => {
const els = window.document.querySelectorAll(selector);
for (let i=0; i < els.length; i++) {
const el = els[i];
if (allowTransitions) {
el.classList.remove('notransition');
} else {
el.classList.add('notransition');
}
}
}
const toggleColorMode = (alternate) => {
// Switch the stylesheets
const alternateStylesheets = window.document.querySelectorAll('link.quarto-color-scheme.quarto-color-alternate');
manageTransitions('#quarto-margin-sidebar .nav-link', false);
if (alternate) {
enableStylesheet(alternateStylesheets);
for (const sheetNode of alternateStylesheets) {
if (sheetNode.id === "quarto-bootstrap") {
toggleBodyColorMode(sheetNode);
}
}
} else {
disableStylesheet(alternateStylesheets);
toggleBodyColorPrimary();
}
manageTransitions('#quarto-margin-sidebar .nav-link', true);
// Switch the toggles
const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
for (let i=0; i < toggles.length; i++) {
const toggle = toggles[i];
if (toggle) {
if (alternate) {
toggle.classList.add("alternate");
} else {
toggle.classList.remove("alternate");
}
}
}
// Hack to workaround the fact that safari doesn't
// properly recolor the scrollbar when toggling (#1455)
if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
manageTransitions("body", false);
window.scrollTo(0, 1);
setTimeout(() => {
window.scrollTo(0, 0);
manageTransitions("body", true);
}, 40);
}
}
const isFileUrl = () => {
return window.location.protocol === 'file:';
}
const hasAlternateSentinel = () => {
let styleSentinel = getColorSchemeSentinel();
if (styleSentinel !== null) {
return styleSentinel === "alternate";
} else {
return false;
}
}
const setStyleSentinel = (alternate) => {
const value = alternate ? "alternate" : "default";
if (!isFileUrl()) {
window.localStorage.setItem("quarto-color-scheme", value);
} else {
localAlternateSentinel = value;
}
}
const getColorSchemeSentinel = () => {
if (!isFileUrl()) {
const storageValue = window.localStorage.getItem("quarto-color-scheme");
return storageValue != null ? storageValue : localAlternateSentinel;
} else {
return localAlternateSentinel;
}
}
let localAlternateSentinel = 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
// Read the current dark / light value
let toAlternate = !hasAlternateSentinel();
toggleColorMode(toAlternate);
setStyleSentinel(toAlternate);
};
// Ensure there is a toggle, if there isn't float one in the top right
if (window.document.querySelector('.quarto-color-scheme-toggle') === null) {
const a = window.document.createElement('a');
a.classList.add('top-right');
a.classList.add('quarto-color-scheme-toggle');
a.href = "";
a.onclick = function() { try { window.quartoToggleColorScheme(); } catch {} return false; };
const i = window.document.createElement("i");
i.classList.add('bi');
a.appendChild(i);
window.document.body.appendChild(a);
}
// Switch to dark mode if need be
if (hasAlternateSentinel()) {
toggleColorMode(true);
} else {
toggleColorMode(false);
}
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {
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