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1. extract_promoters extract_promoters Public

   Bash script for promoter sequences extraction

   Shell 15 5

2. vcf_to_qtl vcf_to_qtl Public

   R script for conversion of vcf file to r/qtl format for subsequent getetic map construction

   R 6 1

3. GATK_pipeline_customized GATK_pipeline_customized Public

   This is GATK pipeline customized for GBS/RAD/SLAF-seq data based SNP calling using HPC

   Shell 4 4

4. Nsite_parser Nsite_parser Public

   Python script for transformation of Nsite output to tabular format

   Python 1

5. snp_to_HardyWeinberg snp_to_HardyWeinberg Public

   R script for visulisation of SNP data according to Hardy-Weinberg equilibrium

   R 1

6. Plot_manhattan_and_qq Plot_manhattan_and_qq Public

   This is a example R script to generate pdf file with manhattan and qq plots for several traits

   R 1