REPARATION_blast v1.0.9

• fixed a bug where the wrong base was taken due to the usage of bam files, which are 0-based, compared to 1-based sam files

REPARATION_blast v1.0.8

• bamfile only version

REPARATION_blast v1.0.7

v1.0.7

REPARATION_blast v1.0.6

Changes

• Added new parameter to allow precomputing bam files
• Added more error output and log files

REPARATION_blast v1.0.5

Changes

• Added missing tabulator symbol to split command in Ribo_seq_occupancy.py

REPARATION_blast v1.0.4

Changes

• added output logs for prodigal
• now expecting prodigal to be installed, rather than present in the bin folder

REPARATION_blast v1.0.3

Changes:

• Added the missing option to set threads for blast

REPARATION_blast v1.0.2

Changes:

• Added help output
• Added option to specify output folder name

REPARATION_blast v1.0.1

Changes:

• Added version output
• Added changelog

REPARATION_blast v1.0.0

Changes to REPARATION

• changed python version from 2.7 to 3.6+
• exchanged usearch -ublast with blastp in order to create a bioconda recipe without licensing issues.
• Release ensures a stable url for the bioconda recipe.