Lab courses for ilumr: the Educational MRI System by Resonint.
Note: If you are still using ilumr software version 2.1.0, you will need to update the ilumr to at least version 2.2.0 to include the Experiment library that is used in the latest version of the courseware. Alternately you can use the v0.1.0 release of this repository with ilumr v2.1.0.
Requires internet access on the ilumr system via its ethernet connection.
Open a terminal in the jupyterlab interface and run:
git clone https://github.com/Resonint/ilumr-courseware.git
-
Download the repository as a zip file
-
Drag the zip file from your downloads folder into the jupyterlab file browser
-
Open a terminal in the jupyterlab interface and run:
unzip ilumr-courseware-main.zip
The notebooks under the courses directory can be opened using the jupyterlab file browser and executed.
Note: The notebooks load python modules from the dashboards-inline directory using relative imports, so they must be run from the directory structure of this repository. To create a copy for e.g. students to use it is recommended to either use the git clone or unzip methods above.
The notebooks can also be viewed on a PC with jupyterlab installed (but generally not executed, as the matipo library is only available on ilumr).
| # | Topic | Status |
|---|---|---|
| 1 | Intro to NMR | Complete |
| 2 | Imaging & K-Space | Complete |
| 3 | Selective Excitation | Complete |
| 4 | Relaxation & Contrast | Second Draft |
| 5 | Fast Imaging | Planned |
| 6 | Imaging Artefacts | Planned |
| 7 | Flow & Diffusion | Planned |
| 8 | Non-Cartesian Imaging | Planned |
Pull requests are welcome. For major changes and feature requests, please visit the Resonint public forum to discuss what you would like to change.
Issues are appreciated for reporting bugs. For general support, create a topic in the forum's support category.
This project has contributions from the following people:
- Cameron Dykstra
- Sharon McTaggart
- Sergei Obruchkov
- Cam Nowikow
- Mike Noseworthy