Implementing the model from DeepDicomSort in MONAI
- Does no support masks in the data right now
- Only supports DICOM datasets for now
- Missing commentaries
- No support for batch size > 1
Run the main.py file with python: python main.py ROOT_DIR [--label-indicator LABEL_INDICATOR]
ROOT_DIR is the directoy containing the DICOM files and the label-indicator defines which DICOM attribute should be used for the generation of the regex expressions in the bidsmap ("SeriesDescription" is the default)