update dt_to_granges to avoid using SEQnames unless neccessary #6
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| name: rworkflows | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| jobs: | |
| rworkflows: | |
| permissions: | |
| contents: write | |
| packages: write | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| container: ${{ matrix.config.cont }} | |
| strategy: | |
| fail-fast: ${{ false }} | |
| matrix: | |
| config: | |
| - os: ubuntu-latest | |
| bioc: devel | |
| r: auto | |
| cont: ghcr.io/bioconductor/bioconductor_docker:devel | |
| rspm: https://packagemanager.rstudio.com/cran/__linux__/latest/release | |
| - os: macOS-latest | |
| bioc: release | |
| r: auto | |
| cont: ~ | |
| rspm: ~ | |
| - os: windows-latest | |
| bioc: release | |
| r: auto | |
| cont: ~ | |
| rspm: ~ | |
| steps: | |
| - uses: neurogenomics/rworkflows@master | |
| with: | |
| run_bioccheck: ${{ false }} | |
| run_rcmdcheck: ${{ true }} | |
| as_cran: ${{ true }} | |
| run_vignettes: ${{ true }} | |
| has_testthat: ${{ true }} | |
| run_covr: ${{ true }} | |
| run_pkgdown: ${{ true }} | |
| has_runit: ${{ false }} | |
| has_latex: ${{ false }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run_docker: ${{ false }} | |
| DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} | |
| runner_os: ${{ runner.os }} | |
| cache_version: cache-v1 |