Updating package dependencies to support caasacore 3.5.0, dropping py…

…thon 3.9 as a result

.circleci/config.yml

@@ -125,10 +125,6 @@ workflows:
   version: 2
   build_and_test:
     jobs:
-      - pyuvdata:
-          name: pyuvdata_3.9
-          python_version: "3.9"
-          env_name: "pyuvdata_tests"
       - pyuvdata:
           name: pyuvdata_3.10
           python_version: "3.10"
@@ -147,7 +143,7 @@ workflows:
           env_name: "pyuvdata_min_deps_tests"
       - pyuvdata:
           name: pyuvdata_min_versions
-          python_version: "3.9"
+          python_version: "3.10"
           env_name: "pyuvdata_min_versions_tests"
       - doctest:
           python_version: "3.11"

.github/workflows/macosx_windows_ci.yaml

@@ -26,7 +26,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [macos-latest, windows-latest]
-        python-version: [3.9, "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12"]
     steps:
       - uses: actions/checkout@main
         with:

README.md

@@ -141,23 +141,23 @@ Note that as of v2.2, `pyuvdata` is only supported on python 3.7+.
 
 Required:
 
-* astropy >= 5.0.4
+* astropy >= 5.1.1
 * docstring_parser>=0.15
-* h5py >= 3.1
-* numpy >= 1.20
+* h5py >= 3.4
+* numpy >= 1.21
 * pyerfa >= 2.0
-* scipy >= 1.5
+* scipy >= 1.7
 * setuptools_scm <7.0|>=7.0.3
 
 Optional:
 
 * astropy-healpix >= 0.6 (for working with beams in HEALPix formats)
 * astroquery >= 0.4.4 (for enabling phasing to ephemeris objects using JPL-Horizons)
-* hdf5plugin >= 3.1.0 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
+* hdf5plugin >= 3.2.0 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
 * lunarsky >=0.2.1 (for working with simulated datasets for lunar telescopes)
 * novas and novas_de405 (for using the NOVAS library for astrometry)
-* python-casacore >= 3.3.1 (for working with CASA measurement sets)
-* pyyaml >= 5.3 (for working with settings files for CST beam files)
+* python-casacore >= 3.5.0 (for working with CASA measurement sets)
+* pyyaml >= 5.4.1 (for working with settings files for CST beam files)
 
 
 The numpy and astropy versions are important, so make sure these are up to date.
@@ -207,7 +207,7 @@ To compile the binary extension modules such that you can successfully run
 If you want to do development on pyuvdata, in addition to the other dependencies
 you will need the following packages:
 
-* pytest >= 6.2
+* pytest >= 6.2.5
 * pytest-cases >= 3.6.9
 * pytest-cov
 * cython >=0.23

ci/pyuvdata_min_deps_tests.yml

@@ -2,14 +2,14 @@ name: pyuvdata_min_deps_tests
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=5.1.1
   - docstring_parser>=0.15
-  - h5py>=3.1
-  - scipy>=1.5
-  - numpy>=1.20.*
+  - h5py>=3.4
+  - scipy>=1.7
+  - numpy>=1.21
   - pyerfa>=2.0
   - coverage
-  - pytest>=6.2.0,<8.0
+  - pytest>=6.2.5,<8.0
   - pytest-cases>=3.6.9
   - pytest-cov
   - pytest-xdist

ci/pyuvdata_min_versions_tests.yml

@@ -2,19 +2,19 @@ name: pyuvdata_min_versions_tests
 channels:
   - conda-forge
 dependencies:
-  - astropy==5.0.4
+  - astropy==5.1.1
   - astropy-healpix==0.6
   - astroquery==0.4.4
   - docstring_parser==0.15
-  - h5py==3.1.*
-  - hdf5plugin==3.1.*
-  - numpy==1.20.*
+  - h5py==3.4.0
+  - hdf5plugin==3.2.0
+  - numpy==1.21
   - pyerfa==2.0
-  - python-casacore==3.3.1
-  - pyyaml==5.3.*
-  - scipy==1.5.*
+  - python-casacore==3.5.0
+  - pyyaml==5.4.1
+  - scipy==1.7
   - coverage
-  - pytest==6.2.0
+  - pytest==6.2.5
   - pytest-cases==3.6.9
   - pytest-cov
   - pytest-xdist

ci/pyuvdata_tests.yml

@@ -2,20 +2,20 @@ name: pyuvdata_tests
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=5.1.1
   - astropy-healpix>=0.6
   - astroquery>=0.4.4
   - docstring_parser>=0.15
-  - h5py>=3.1
-  - hdf5plugin>=3.1.0
+  - h5py>=3.4
+  - hdf5plugin>=3.2.0
   - matplotlib  # this is just for the doctests.
-  - numpy>=1.20.*
+  - numpy>=1.21.*
   - pyerfa>=2.0
-  - python-casacore>=3.3.1
-  - pyyaml>=5.3
-  - scipy>=1.5
+  - python-casacore>=3.5.0
+  - pyyaml>=5.4.1
+  - scipy>=1.7
   - coverage
-  - pytest>=6.2.0,<8.0
+  - pytest>=6.2.5,<8.0
   - pytest-cases>=3.6.9
   - pytest-cov
   - pytest-xdist

ci/pyuvdata_tests_windows.yml

@@ -2,19 +2,19 @@ name: pyuvdata_tests_windows
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=5.1.1
   - astropy-healpix>=0.6
   - astroquery>=0.4.4
   - docstring_parser>=0.15
-  - h5py>=3.1
+  - h5py>=3.4
   - hdf5>=1.12.0
-  - hdf5plugin>=3.1.0
-  - numpy>=1.20.*
+  - hdf5plugin>=3.2.0
+  - numpy>=1.21.*
   - pyerfa>=2.0
-  - pyyaml>=5.3
-  - scipy>=1.5
+  - pyyaml>=5.4.1
+  - scipy>=1.7
   - coverage
-  - pytest>=6.2.0,<8.0
+  - pytest>=6.2.5,<8.0
   - pytest-cases>=3.6.9
   - pytest-cov
   - pytest-xdist

environment.yaml

@@ -2,27 +2,27 @@ name: pyuvdata
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=5.1.1
   - astropy-healpix>=0.6
   - astroquery>=0.4.4
   - coverage
   - cython>=0.23
   - docstring_parser>=0.15
-  - h5py>=3.1
-  - hdf5plugin>=3.1.0
+  - h5py>=3.4
+  - hdf5plugin>=3.2.0
   - matplotlib
-  - numpy>=1.20
+  - numpy>=1.21
   - pip
   - pre-commit
   - pyerfa>=2.0
   - pypandoc
-  - pytest>=6.2.0,<8.0
+  - pytest>=6.2.5,<8.0
   - pytest-cases>=3.6.9
   - pytest-cov
   - pytest-xdist
-  - python-casacore>=3.3.1
-  - pyyaml>=5.3
-  - scipy>=1.5
+  - python-casacore>=3.5.0
+  - pyyaml>=5.4.1
+  - scipy>=1.7
   - setuptools_scm<7.0|>=7.0.3
   - sphinx
   - pip:

setup.py

@@ -103,9 +103,9 @@ def is_platform_windows():
     extensions.append(miriad_extension)
 
 astroquery_reqs = ["astroquery>=0.4.4"]
-casa_reqs = ["python-casacore>=3.3.1"]
-cst_reqs = ["pyyaml>=5.3"]
-hdf5_compression_reqs = ["hdf5plugin>=3.1.0"]
+casa_reqs = ["python-casacore>=3.5.0"]
+cst_reqs = ["pyyaml>=5.4.1"]
+hdf5_compression_reqs = ["hdf5plugin>=3.2.0"]
 healpix_reqs = ["astropy_healpix>=0.6"]
 lunar_reqs = ["lunarsky>=0.2.1"]
 novas_reqs = ["novas", "novas_de405"]
@@ -119,7 +119,7 @@ def is_platform_windows():
     + novas_reqs
 )
 test_reqs = all_optional_reqs + [
-    "pytest>=6.2, <8.0",
+    "pytest>=6.2.5, <8.0",
     "pytest-xdist",
     "pytest-cases>=3.6.9",
     "pytest-cov",
@@ -144,12 +144,12 @@ def is_platform_windows():
     "use_scm_version": {"local_scheme": branch_scheme},
     "include_package_data": True,
     "install_requires": [
-        "astropy>=5.0.4",
+        "astropy>=5.1.1",
         "docstring-parser>=0.15",
-        "h5py>=3.1",
-        "numpy>=1.20",
+        "h5py>=3.4",
+        "numpy>=1.21",
         "pyerfa>=2.0",
-        "scipy>=1.5",
+        "scipy>=1.7",
         "setuptools>=61",
         "setuptools_scm!=7.0.0,!=7.0.1,!=7.0.2",
     ],
@@ -170,7 +170,6 @@ def is_platform_windows():
         "Development Status :: 5 - Production/Stable",
         "Intended Audience :: Science/Research",
         "License :: OSI Approved :: BSD License",
-        "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
         "Programming Language :: Python :: 3.12",