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arcasHLA reference files are now stored as human-readable JSON files instead of Python's binary pickle format.
arcasHLA now uses defaults for fragment length and standard deviation when run on single-end reads.
Fixed
arcasHLA reference module has been updated and functionality restored. Consistent with v0.2.0 release notes, due to the file sizes of the data stored in the IMGT/HLA repository, arcasHLA requires the latest version of Git Large File Storage to download later IMGT/HLA references. However, due to the depreciation of older git-lfs commands, there were newly introduced logical errors which have been resolved with this release.