updated version numbers for new release

RabadanLab · Dec 9, 2021 · c382f2e · c382f2e
1 parent 8d8379d
commit c382f2e
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Showing 8 changed files with 16 additions and 23 deletions.
diff --git a/scripts/align.py b/scripts/align.py
@@ -43,8 +43,8 @@
 from reference import check_ref, get_exon_combinations
 from arcas_utilities import *
 
-__version__     = '0.2.5'
-__date__        = '2021-04-12'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 #   Paths and filenames

diff --git a/scripts/arcas_utilities.py b/scripts/arcas_utilities.py
@@ -28,8 +28,8 @@
 import uuid
 from subprocess import PIPE, STDOUT, run
 
-__version__     = '0.2.0'
-__date__        = '2019-06-26'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 

diff --git a/scripts/convert.py b/scripts/convert.py
@@ -36,16 +36,15 @@
 
 #-------------------------------------------------------------------------------
 
-__version__     = '0.2.5'
-__date__        = '2021-04-12'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 #   Paths and fileames
 #-------------------------------------------------------------------------------
 
 rootDir = dirname(realpath(__file__)) + '/../'
 
-#hla_convert = rootDir + 'dat/ref/hla.convert.p'
 hla_convert_json = rootDir + 'dat/ref/hla.convert.json'
 
 #-------------------------------------------------------------------------------

diff --git a/scripts/extract.py b/scripts/extract.py
@@ -35,8 +35,8 @@
 from argparse import RawTextHelpFormatter
 from arcas_utilities import *
 
-__version__     = '0.2.5'
-__date__        = '2021-04-12'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 #   Extract Reads

diff --git a/scripts/genotype.py b/scripts/genotype.py
@@ -44,16 +44,15 @@
 from arcas_utilities import *
 from align import *
 
-__version__     = '0.2.5'
-__date__        = '2021-04-12'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 #   Paths and filenames
 #-------------------------------------------------------------------------------
 
 rootDir = os.path.dirname(os.path.realpath(__file__)) + '/../'
 
-#hla_p      = rootDir + 'dat/ref/hla.p'
 hla_json   = rootDir + 'dat/ref/hla.p.json'
 hla_idx    = rootDir + 'dat/ref/hla.idx'
 hla_freq   = rootDir + 'dat/info/hla_freq.tsv'

diff --git a/scripts/merge.py b/scripts/merge.py
@@ -32,8 +32,8 @@
 
 from arcas_utilities import check_path
 
-__version__     = '0.2.0'
-__date__        = '2019-06-26'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 

diff --git a/scripts/partial.py b/scripts/partial.py
@@ -43,16 +43,15 @@
 from align import *
 from genotype import expectation_maximization
 
-__version__     = '0.2.5'
-__date__        = '2021-04-12'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 #   Paths and filenames
 #-------------------------------------------------------------------------------
 
 rootDir = os.path.dirname(os.path.realpath(__file__)) + '/../'
 
-#partial_p       = rootDir + 'dat/ref/hla_partial.p'
 partial_json       = rootDir + 'dat/ref/hla_partial.p.json'
 partial_idx     = rootDir + 'dat/ref/hla_partial.idx'
 hla_freq        = rootDir + 'dat/info/hla_freq.tsv'

diff --git a/scripts/reference.py b/scripts/reference.py
@@ -45,8 +45,8 @@
 
 from arcas_utilities import *
 
-__version__     = '0.2.5'
-__date__        = '2021-04-12'
+__version__     = '0.3.0'
+__date__        = '2021-12-09'
 
 #-------------------------------------------------------------------------------
 #   Paths and fileames
@@ -59,17 +59,13 @@
 hla_dat         = rootDir + 'dat/IMGTHLA/hla.dat'
 hla_nom_g       = rootDir + 'dat/IMGTHLA/wmda/hla_nom_g.txt'
 hla_nom_p       = rootDir + 'dat/IMGTHLA/wmda/hla_nom_p.txt'
-#hla_convert    = rootDir + 'dat/ref/hla.convert.p'
 hla_convert_json = rootDir + 'dat/ref/hla.convert.json'
 hla_fa          = rootDir + 'dat/ref/hla.fasta'
 partial_fa      = rootDir + 'dat/ref/hla_partial.fasta'
-#hla_p           = rootDir + 'dat/ref/hla.p'
-#partial_p       = rootDir + 'dat/ref/hla_partial.p'
 hla_json        = rootDir + 'dat/ref/hla.p.json'
 partial_json    = rootDir + 'dat/ref/hla_partial.p.json'
 hla_idx         = rootDir + 'dat/ref/hla.idx'
 partial_idx     = rootDir + 'dat/ref/hla_partial.idx'
-#parameters      = rootDir + 'dat/info/parameters.p'
 parameters_json = rootDir + 'dat/info/parameters.json'
 
 #-------------------------------------------------------------------------------