Merge pull request #123 from RabadanLab/buendia/ref_patch

Update dependencies for bioconda integration
RabadanLab · Feb 8, 2024 · aeff463 · aeff463
2 parents ae83bd1 + a1aeb44
commit aeff463
Showing 1 changed file with 10 additions and 10 deletions.
diff --git a/environment.yml b/environment.yml
@@ -1,16 +1,16 @@
 name: arcas-hla
 channels:
 - bioconda
+- conda-forge
 dependencies:
-- bedtools==2.26.0
+- bedtools==2.31.1
+- biopython==1.83
 - kallisto==0.44.0
-- pip==23.3.1
+- numpy==1.26.4
+- pandas==2.2.0
+- pip==24.0
+- pyarrow==15.0.0
+- pytest==8.0.0
 - python==3.10.0
-- samtools==1.11
-- pip:
-  - biopython==1.83
-  - numpy==1.26.3
-  - pandas==2.2.0
-  - pyarrow==15.0.0
-  - pytest==8.0.0
-  - scipy==1.12.0
+- samtools==1.19.2
+- scipy==1.12.0