Make PFDA vignette not stop on error #21
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Running on CentOS 7 with R 4.1.2 with fully-updated packages on 2022 March 17 produced the following error ``` --- re-building ‘faustPFDA.Rmd’ using rmarkdown Quitting from lines 426-439 (faustPFDA.Rmd) Error: processing vignette 'faustPFDA.Rmd' failed with diagnostics: Downdated VtV is not positive definite --- failed re-building ‘faustPFDA.Rmd’ ``` when building vignettes on install, which blocked the install. To allow the Rmd to complete even with the error (and allow at least to see part of that vignette and the other two vignettes when installing with vignettes), I added `error = TRUE` as an argument to `knitr::opts_chunk$set`.
In R3.6.3, using vectors with length greater than one in the condition of an if statement merely warned and used the first element, but past verion 4.something it throws an error. It's not entirely clear to me whether any or all would be better. Presumably any, as if there are any NAs then we would want to fix the behaviour. So that's what we went with.
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Running on CentOS 7 with R 4.1.2 with fully-updated packages on 2022 March 17 produced the following error
when building vignettes on install, which blocked the install. To allow the Rmd to complete even with the error (and allow at least to see part of that vignette and the other two vignettes when installing with vignettes), I added
error = TRUEas an argument toknitr::opts_chunk$set.Of course, it would be better to fix the error, but this at least allows installation with two out of three vignettes.
Attached is a PDF of the output from running the PFDA vignette.
FAUST PFDA.pdf