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Implemented unit test for the function load.lcms.R #216

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merged 10 commits into from
Apr 24, 2024
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This PR adds the unit test test-load.lcms.R and mzXML file. It checks that the function reads the mzML and mzXML formats.

closes #185

@wverastegui wverastegui requested a review from hechth April 16, 2024 12:45
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codecov bot commented Apr 16, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 65.78%. Comparing base (70be153) to head (ec2da0f).

❗ Current head ec2da0f differs from pull request most recent head ae8b451. Consider uploading reports for the commit ae8b451 to get more accurate results

Additional details and impacted files
@@           Coverage Diff           @@
##           master     #216   +/-   ##
=======================================
  Coverage   65.78%   65.78%           
=======================================
  Files          23       23           
  Lines        2680     2680           
=======================================
  Hits         1763     1763           
  Misses        917      917           

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The test should test more aspects - we should also expand this to mzdata.

tests/testthat/test-load.lcms.R Outdated Show resolved Hide resolved
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hechth commented Apr 18, 2024

Please update the download instructions in the readme to include the added files.

@hechth hechth marked this pull request as ready for review April 18, 2024 09:13
@hechth hechth merged commit c1937cd into master Apr 24, 2024
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Ensure the tool also works with all formats compatible with mzR
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