Merge pull request #14 from zargham-ahmad/refactor #46
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| # This is a basic workflow to help you get started with Actions | |
| name: R Conda | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ windows-latest, ubuntu-latest, macos-14] | |
| experimental: [false] | |
| include: | |
| - os: macos-14-arm64 | |
| experimental: true | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.experimental }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Install wget | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| run: choco install wget | |
| - name: Sets env vars for osx-64 | |
| run: echo "CONDA_SUBDIR=osx-64" >> $GITHUB_ENV | |
| if: ${{ matrix.os == 'macos-14' }} | |
| - name: Create conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: recetox-waveica-dev | |
| auto-update-conda: true | |
| environment-file: conda/environment-dev.yaml | |
| auto-activate-base: false | |
| - run: | | |
| conda init bash | |
| conda env list | |
| - name: Fetch input data | |
| run: | | |
| wget -P tests/testthat/test-data -i tests/remote-files/fetch_input_data.txt | |
| wget -P tests/testthat/test-data/batchwise-correction -i tests/remote-files/fetch_waveica_batchwise.txt | |
| wget -P tests/testthat/test-data/nonbatchwise-correction -i tests/remote-files/fetch_waveica_nonbatchwise.txt | |
| - name: setup Rtools | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| uses: r-windows/install-rtools@master | |
| - name: Run devtools::check() | |
| run: | | |
| conda activate recetox-waveica-dev | |
| Rscript -e "devtools::check(error_on = 'error')" | |