Skip to content

Extension of bruker precursor information (2nd attempt) #1435

Extension of bruker precursor information (2nd attempt)

Extension of bruker precursor information (2nd attempt) #1435

Workflow file for this run

# Optional, but good to give a name
name: Unofficial toolset CI
# This means the workflow will be triggered
# on push to master branch
# when a pull request arrives to the master branch. (The source branch does not matter)
# workflow_dispatch to trigger manually or via API call
on:
push:
branches: [ master ]
paths-ignore:
- 'pwiz_tools/MSConvertGUI/**'
- 'pwiz_tools/SeeMS/**'
- 'pwiz_tools/Shared/**'
- 'pwiz_tools/Skyline/**'
- 'pwiz_tools/Topograph/**'
- 'scripts/Topograph/**'
- 'doc/**'
- 'clean.*'
- '.github/workflows/cherrypick-to-release.yml'
pull_request:
branches: [ master ]
paths-ignore:
- 'pwiz_tools/MSConvertGUI/**'
- 'pwiz_tools/SeeMS/**'
- 'pwiz_tools/Shared/**'
- 'pwiz_tools/Skyline/**'
- 'pwiz_tools/Topograph/**'
- 'doc/**'
- 'clean.*'
- '.github/workflows/cherrypick-to-release.yml'
# There is a single job here called "build" (The word "build" is NOT a keyword, you can use anything there)
jobs:
build:
# Just a free-text name to be descriptive
name: Build with ${{ matrix.config.compiler }} on ${{ matrix.config.os }}
strategy:
fail-fast: false
matrix:
config:
# - {
# name: "Windows Latest MSVC",
# os: windows-latest,
# compiler: 'latest MSVC'
# }
- {
name: "Ubuntu Latest GCC",
os: ubuntu-latest,
compiler: 'latest g++',
toolset: 'toolset=gcc'
}
# - {
# name: "Ubuntu GCC 9",
# os: ubuntu-latest,
# compiler: g++-9,
# toolset: 'toolset=gcc'
# }
- {
name: "macOS Latest Clang",
os: macos-12,
compiler: 'latest clang',
toolset: 'toolset=darwin'
}
# Using the value from the matrix above we select the platform (operating system) to run on
runs-on: ${{ matrix.config.os }}
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v4
- name: Get number of CPU cores
id: cpu-count
uses: SimenB/github-actions-cpu-cores@v1
- name: Print env
run: |
echo github.event.action: ${{ github.event.action }}
echo github.event_name: ${{ github.event_name }}
# - name: Install dependencies on windows
# if: startsWith(matrix.config.os, 'windows')
# run: |
# # cmd "${{ matrix.config.environment_script }}"
- name: Install dependencies on ubuntu
if: startsWith(matrix.config.name, 'Ubuntu Latest GCC')
run: |
gcc --version
- name: Install dependencies on ubuntu9
if: startsWith(matrix.config.name, 'Ubuntu GCC 9')
run: |
echo Update gcc-9 =======================================================================
echo gcc version before
gcc --version
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get install gcc-9 g++-9
sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 90 --slave /usr/bin/g++ g++ /usr/bin/g++-9 --slave /usr/bin/gcov gcov /usr/bin/gcov-9
echo gcc version after
gcc --version
- name: Install dependencies on macos
if: startsWith(matrix.config.os, 'macos')
run: |
clang --version
gcc --version
- name: Build
shell: bash
run: |
unset JAVA_HOME
./quickbuild.sh --abbreviate-paths --i-agree-to-the-vendor-licenses -j${{ steps.cpu-count.outputs.count }} address-model=64 pwiz executables ${{ matrix.config.toolset }}
./quickbuild.sh --abbreviate-paths --i-agree-to-the-vendor-licenses -j${{ steps.cpu-count.outputs.count }} address-model=64 pwiz_tools/BiblioSpec ${{ matrix.config.toolset }}