Dependency Housekeeping: Removed circe, jackson & Organised Versi…

…ons (joernio#4472)

Joern has **a lot** of dependencies, and I've found `meta-build` out of sync with some `build.sbt` files specifying the same dependencies.

Also, `Versions.scala` is used haphazardly and is inconsistent. This change congregates all versions there, so we can see all versions of dependencies in Joern.

This all started by wondering why we have `jackson-databind`, `ujson`, and `circe` to deserialize JSON, so I removed `circe` and `jackson-databind` while keeping `ujson`. In any-case, this organizes dependencies and paves the way for removing unused ones.

Note, some code in `jssrc2cpg` (@max-leuthaeuser) and `gosrc2cpg` (@pandurangpatil) were modified for the migration to deserialize with `ujson` instead of the existing libraries.

build.sbt

@@ -48,9 +48,9 @@ lazy val aggregatedProjects: Seq[ProjectReference] = Seq(
 )
 
 ThisBuild / libraryDependencies ++= Seq(
-  "org.slf4j"                % "slf4j-api"         % "2.0.7",
-  "org.apache.logging.log4j" % "log4j-slf4j2-impl" % "2.20.0" % Optional,
-  "org.apache.logging.log4j" % "log4j-core"        % "2.20.0" % Optional
+  "org.slf4j"                % "slf4j-api"         % Versions.slf4j,
+  "org.apache.logging.log4j" % "log4j-slf4j2-impl" % Versions.log4j % Optional,
+  "org.apache.logging.log4j" % "log4j-core"        % Versions.log4j % Optional
   // `Optional` means "not transitive", but still included in "stage/lib"
 )
 
@@ -110,6 +110,6 @@ publish / skip := true // don't publish the root project
 // Avoids running root tasks on the benchmarks project
 lazy val root = project
   .in(file("."))
-  .aggregate(aggregatedProjects*)
+  .aggregate(aggregatedProjects *)
 
 ThisBuild / Test / packageBin / publishArtifact := true

console/build.sbt

@@ -2,14 +2,6 @@ name := "console"
 
 enablePlugins(JavaAppPackaging)
 
-val ScoptVersion          = "4.1.0"
-val CaskVersion           = "0.9.2"
-val CirceVersion          = "0.14.6"
-val ZeroturnaroundVersion = "1.17"
-val OsLibVersion          = "0.9.3"
-val PprintVersion         = "0.8.1"
-val CommonsLangVersion    = "3.14.0"
-
 dependsOn(
   Projects.semanticcpg,
   Projects.macros,
@@ -25,15 +17,13 @@ dependsOn(
 libraryDependencies ++= Seq(
   "io.shiftleft"         %% "codepropertygraph"    % Versions.cpg,
   "com.michaelpollmeier" %% "scala-repl-pp-server" % Versions.scalaReplPP,
-  "com.github.scopt"     %% "scopt"                % ScoptVersion,
-  "org.typelevel"        %% "cats-effect"          % Versions.cats,
-  "io.circe"             %% "circe-generic"        % CirceVersion,
-  "io.circe"             %% "circe-parser"         % CirceVersion,
-  "org.zeroturnaround"    % "zt-zip"               % ZeroturnaroundVersion,
-  "com.lihaoyi"          %% "os-lib"               % OsLibVersion,
-  "com.lihaoyi"          %% "pprint"               % PprintVersion,
-  "com.lihaoyi"          %% "cask"                 % CaskVersion,
-  "org.apache.commons"    % "commons-lang3"        % CommonsLangVersion,
+  "com.github.scopt"     %% "scopt"                % Versions.scopt,
+  "org.typelevel"        %% "cats-effect"          % Versions.catsEffect,
+  "org.zeroturnaround"    % "zt-zip"               % Versions.zeroTurnaround,
+  "com.lihaoyi"          %% "os-lib"               % Versions.osLib,
+  "com.lihaoyi"          %% "pprint"               % Versions.pPrint,
+  "com.lihaoyi"          %% "cask"                 % Versions.cask,
+  "org.apache.commons"    % "commons-lang3"        % Versions.commonsLang,
   "org.scalatest"        %% "scalatest"            % Versions.scalatest % Test
 )
 

dataflowengineoss/build.sbt

@@ -5,11 +5,10 @@ dependsOn(Projects.semanticcpg, Projects.x2cpg % "compile->compile;test->test")
 libraryDependencies ++= Seq(
   "org.antlr"               % "antlr4"                     % Versions.antlr,
   "org.antlr"               % "antlr4-runtime"             % Versions.antlr,
-  "io.circe"               %% "circe-core"                 % Versions.circe,
-  "io.circe"               %% "circe-generic"              % Versions.circe,
-  "io.circe"               %% "circe-parser"               % Versions.circe,
+  "com.lihaoyi"            %% "upickle"                    % Versions.upickle,
+  "com.lihaoyi"            %% "ujson"                      % Versions.upickle,
   "org.scalatest"          %% "scalatest"                  % Versions.scalatest % Test,
-  "org.scala-lang.modules" %% "scala-parallel-collections" % "1.0.4"
+  "org.scala-lang.modules" %% "scala-parallel-collections" % Versions.scalaParallel
 )
 
 enablePlugins(Antlr4Plugin)