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StephanPreibisch authored Aug 13, 2024
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Expand Up @@ -11,9 +11,9 @@ for the registration and fusion of multi-angle SPIM acquisitions.

# Installation

The easiest is to get the SPIM Reconstruction as part of [Fiji](http://fiji.sc/).
The easiest is to use the multi-view reconstruction is as part of [Fiji](http://fiji.sc/), it is part of [BigStitcher](https://www.google.com/search?rls=en&q=BigStitcher&ie=UTF-8&oe=UTF-8).

See also the [SPIM Registration page on the ImageJ
You can also check the **outdated** [Multiview-Reconstruction page on the ImageJ
wiki](http://imagej.net/Multiview-Reconstruction).

For questions, bug reports, remarks and comments just use github here or send
Expand All @@ -23,10 +23,14 @@ If you want to **build the code** you can use Maven calling `mvn clean package`

# Citation

Please note that the SPIM reconstruction plugin available through Fiji, is
Please note that the Multiview-Reconstruction/BigStitcher plugin available through Fiji, is
based on publications. If you use it successfully for your research please be
so kind to cite our work:

* D. Hörl, F.R. Rusak, F. Preusser, P. Tillberg, N. Randel, R.K. Chhetri, A. Cardona, P.J. Keller, H. Harz, H. Leonhardt, M. Treier & S. Preibisch, "BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples",
Nature Methods, 16: 870–874.
[Webpage](https://www.nature.com/articles/s41592-019-0501-0)

* S. Preibisch, S. Saalfeld, J. Schindelin and P. Tomancak (2010) "Software for
bead-based registration of selective plane illumination microscopy data",
Nature Methods, 7(6):418-419.
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