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analyze error popup now also highlights the two worst views
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162
src/main/java/net/preibisch/mvrecon/fiji/spimdata/explorer/popup/AnalyzeErrorPopup.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,162 @@ | ||
| /*- | ||
| * #%L | ||
| * Software for the reconstruction of multi-view microscopic acquisitions | ||
| * like Selective Plane Illumination Microscopy (SPIM) Data. | ||
| * %% | ||
| * Copyright (C) 2012 - 2024 Multiview Reconstruction developers. | ||
| * %% | ||
| * This program is free software: you can redistribute it and/or modify | ||
| * it under the terms of the GNU General Public License as | ||
| * published by the Free Software Foundation, either version 2 of the | ||
| * License, or (at your option) any later version. | ||
| * | ||
| * This program is distributed in the hope that it will be useful, | ||
| * but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| * GNU General Public License for more details. | ||
| * | ||
| * You should have received a copy of the GNU General Public | ||
| * License along with this program. If not, see | ||
| * <http://www.gnu.org/licenses/gpl-2.0.html>. | ||
| * #L% | ||
| */ | ||
| package net.preibisch.mvrecon.fiji.spimdata.explorer.popup; | ||
|
|
||
| import java.awt.event.ActionEvent; | ||
| import java.awt.event.ActionListener; | ||
| import java.util.ArrayList; | ||
| import java.util.HashMap; | ||
| import java.util.HashSet; | ||
| import java.util.List; | ||
|
|
||
| import javax.swing.JMenuItem; | ||
|
|
||
| import mpicbg.spim.data.generic.sequence.BasicViewDescription; | ||
| import mpicbg.spim.data.sequence.ViewId; | ||
| import net.imglib2.multithreading.SimpleMultiThreading; | ||
| import net.imglib2.util.Pair; | ||
| import net.preibisch.legacy.io.IOFunctions; | ||
| import net.preibisch.mvrecon.fiji.plugin.Analyze_Errors; | ||
| import net.preibisch.mvrecon.fiji.spimdata.explorer.ExplorerWindow; | ||
| import net.preibisch.mvrecon.fiji.spimdata.explorer.ViewSetupExplorerPanel; | ||
| import net.preibisch.mvrecon.fiji.spimdata.explorer.interestpoint.InterestPointExplorer; | ||
| import net.preibisch.mvrecon.process.interestpointregistration.TransformationTools; | ||
| import net.preibisch.mvrecon.process.interestpointregistration.pairwise.constellation.grouping.Group; | ||
|
|
||
| public class AnalyzeErrorPopup extends JMenuItem implements ExplorerWindowSetable | ||
| { | ||
| private static final long serialVersionUID = 7784076140119163902L; | ||
|
|
||
| ViewSetupExplorerPanel< ? > panel; | ||
| InterestPointExplorer< ? > ipe = null; | ||
|
|
||
| public AnalyzeErrorPopup() | ||
| { | ||
| super( "Analyze Alignment Errors ..." ); | ||
|
|
||
| this.addActionListener( new MyActionListener() ); | ||
| } | ||
|
|
||
| @Override | ||
| public JMenuItem setExplorerWindow( final ExplorerWindow< ? > panel ) | ||
| { | ||
| this.panel = (ViewSetupExplorerPanel< ? >)panel; | ||
| return this; | ||
| } | ||
|
|
||
| public class MyActionListener implements ActionListener | ||
| { | ||
| @Override | ||
| public void actionPerformed( final ActionEvent e ) | ||
| { | ||
| if ( panel == null ) | ||
| { | ||
| IOFunctions.println( "Panel not set for " + this.getClass().getSimpleName() ); | ||
| return; | ||
| } | ||
|
|
||
| new Thread( new Runnable() | ||
| { | ||
| @Override | ||
| public void run() | ||
| { | ||
| final List< ViewId > viewIds = | ||
| ApplyTransformationPopup.getSelectedViews( panel ); | ||
|
|
||
| final HashMap<String, Double > labelAndWeights = | ||
| Analyze_Errors.getParameters( panel.getSpimData(), viewIds ); | ||
|
|
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| final ArrayList<Pair<Pair<ViewId, ViewId>, Double>> errors = | ||
| Analyze_Errors.getErrors( panel.getSpimData(), viewIds, labelAndWeights ); | ||
|
|
||
| if ( errors.size() > 0 ) | ||
| { | ||
| errors.forEach( e -> IOFunctions.println( Group.pvid( e.getA().getA() ) + " <-> " + Group.pvid( e.getA().getB() ) + ": " + e.getB() + " px.") ); | ||
|
|
||
| // disable coloring | ||
| final BDVPopup p = panel.bdvPopup(); | ||
| if ( p != null && p.bdv != null && p.bdv.getViewerFrame().isVisible() ) | ||
| panel.updateBDV( p.bdv, false, panel.getSpimData(), null, panel.selectedRows ); | ||
|
|
||
| // ungroup everything | ||
| ((ViewSetupExplorerPanel)panel).groupTilesCheckbox.setSelected( false ); | ||
| ((ViewSetupExplorerPanel)panel).groupIllumsCheckbox.setSelected( false ); | ||
|
|
||
| panel.getTableModel().clearGroupingFactors(); | ||
| panel.updateContent(); | ||
|
|
||
| // wait until the table is updated (otherwise there might be an exception thrown) | ||
| SimpleMultiThreading.threadWait( 100 ); | ||
|
|
||
| final Pair<Pair<ViewId, ViewId>, Double> worstError = errors.get( 0 ); | ||
|
|
||
| // select the two rows | ||
| boolean setFirst = false; | ||
| for ( int r = 0; r < panel.table.getRowCount(); ++r ) | ||
| { | ||
| //System.out.println( panel.table.getValueAt( r, 0 ) + ", " + Integer.parseInt( (String)panel.table.getValueAt( r, 0 ) ) ); | ||
| //System.out.println( panel.table.getValueAt( r, 1 ) + ", " + Integer.parseInt( (String)panel.table.getValueAt( r, 1 ) ) ); | ||
| //System.out.println(); | ||
|
|
||
| final int tp = Integer.parseInt( (String)panel.table.getValueAt( r, 0 ) ); | ||
| final int vs = Integer.parseInt( (String)panel.table.getValueAt( r, 1 ) ); | ||
| //System.out.println( tp + ", " + vs ); | ||
|
|
||
| if ( tp == worstError.getA().getA().getTimePointId() && vs == worstError.getA().getA().getViewSetupId() || | ||
| tp == worstError.getA().getB().getTimePointId() && vs == worstError.getA().getB().getViewSetupId()) | ||
| { | ||
| System.out.println( "setting" ); | ||
| if ( setFirst ) | ||
| panel.table.addRowSelectionInterval(r, r); | ||
| else | ||
| { | ||
| setFirst = true; | ||
| panel.table.setRowSelectionInterval(r, r); | ||
| } | ||
| } | ||
| } | ||
|
|
||
| // wait until the table is updated (otherwise there might be an exception thrown) | ||
| SimpleMultiThreading.threadWait( 100 ); | ||
|
|
||
| // TODO: zoom into the two | ||
| if ( p != null && p.bdv != null && p.bdv.getViewerFrame().isVisible() ) | ||
| { | ||
| TransformationTools.reCenterViews( p.bdv, | ||
| panel.selectedRows.stream().collect( | ||
| HashSet< BasicViewDescription< ? > >::new, | ||
| ( a, b ) -> a.addAll( b ), ( a, b ) -> a.addAll( b ) ), | ||
| panel.getSpimData().getViewRegistrations() ); | ||
| } | ||
|
|
||
| // TODO: color both red | ||
| } | ||
| else | ||
| { | ||
| IOFunctions.println( "No corresponding interest points found." ); | ||
| } | ||
| } | ||
| }).start(); | ||
| } | ||
| } | ||
| } |