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Update README.md
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PollyTikhonova authored Apr 3, 2020
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Expand Up @@ -46,7 +46,7 @@ If two quadruplexes intersect we prefer the one that: *(the conditions are liste
By default, the output will contain the quadruplex sequences. In case of big fasta sequences, you will need significantly more **time** and **space on the disk**. To avoid overconsuming of the resources you can do the following:\
- If you do not need sequences you can turn off this behaviour with the tag `--no-sequences`.
- Also, you can reduce the time of computations by multiprocessing option. Just type the number of kernels the program may use, like `--nthreads 4`. *Warning: there could be some issues with multiprocessing in Windows systems.*
- By default, the program will generate 4 files, containing information about: quadruplets, quadruplexes, groups and ranges. You may request not all the files as output. Just type one or several names with the tag:
- By default, the program will generate 4 files, containing information about: quadruplets, quadruplexes, groups and ranges. You may request not all the files as output. Just type one or several names with the tag: `--output_type 0 3`, where `0 - quadruplets, 1 - quadruplexes, 2 - groups, 3 - ranges, 4 or all - all files`.


### Quadruplex Description
Expand Down Expand Up @@ -90,4 +90,10 @@ optional arguments:
-v, --verbose Show the status of procesing or not. By default print
stages info
--nthreads NTHREADS Number of kernels to use.
--output_type OUTPUT_TYPE [OUTPUT_TYPE ...]
List the numbers of file types you need the tool to
generate or write all if you want all files. All - is
the default. 0 - quadruplets, 1 - quadruplexes, 2 -
groups, 3 - ranges. For example, --output_type 1 2
will generate only 2 files: quadruplexes and groups.
```

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