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1,086
releases/2018-10-26/imports/go_ppo_import_module.owl
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| <?xml version="1.0"?> | ||
| <rdf:RDF xmlns="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/imports/pato_ppo_import_module.owl#" | ||
| xml:base="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/imports/pato_ppo_import_module.owl" | ||
| xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" | ||
| xmlns:owl="http://www.w3.org/2002/07/owl#" | ||
| xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" | ||
| xmlns:xml="http://www.w3.org/XML/1998/namespace" | ||
| xmlns:xsd="http://www.w3.org/2001/XMLSchema#" | ||
| xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" | ||
| xmlns:obo="http://purl.obolibrary.org/obo/" | ||
| xmlns:dc="http://purl.org/dc/elements/1.1/"> | ||
| <owl:Ontology rdf:about="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/imports/pato_ppo_import_module.owl"> | ||
| <owl:versionIRI rdf:resource="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/releases/2018-10-26/imports/pato_ppo_import_module.owl"/> | ||
| <dc:source rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2017-03-22/pato.owl"/> | ||
| </owl:Ontology> | ||
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| <!-- | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| // | ||
| // Annotation properties | ||
| // | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| --> | ||
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| <!-- http://purl.obolibrary.org/obo/IAO_0000115 --> | ||
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| <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#id --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/> | ||
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| <!-- | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| // | ||
| // Classes | ||
| // | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| --> | ||
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| <!-- http://purl.obolibrary.org/obo/PATO_0000001 --> | ||
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| <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000001"> | ||
| <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities</obo:IAO_0000115> | ||
| <oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000072</oboInOwl:hasAlternativeId> | ||
| <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">trait</oboInOwl:hasExactSynonym> | ||
| <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace> | ||
| <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000001</oboInOwl:id> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</rdfs:label> | ||
| </owl:Class> | ||
| <owl:Axiom> | ||
| <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/> | ||
| <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
| <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities</owl:annotatedTarget> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref> | ||
| </owl:Axiom> | ||
| </rdf:RDF> | ||
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| <!-- Generated by the OWL API (version 4.2.4) https://github.com/owlcs/owlapi --> | ||
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6,288
releases/2018-10-26/imports/po_ppo_import_module.owl
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235 changes: 235 additions & 0 deletions
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releases/2018-10-26/imports/uberon_ppo_import_module.owl
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,235 @@ | ||
| <?xml version="1.0"?> | ||
| <rdf:RDF xmlns="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/imports/uberon_ppo_import_module.owl#" | ||
| xml:base="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/imports/uberon_ppo_import_module.owl" | ||
| xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" | ||
| xmlns:owl="http://www.w3.org/2002/07/owl#" | ||
| xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" | ||
| xmlns:xml="http://www.w3.org/XML/1998/namespace" | ||
| xmlns:xsd="http://www.w3.org/2001/XMLSchema#" | ||
| xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" | ||
| xmlns:obo="http://purl.obolibrary.org/obo/" | ||
| xmlns:dc="http://purl.org/dc/elements/1.1/"> | ||
| <owl:Ontology rdf:about="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/imports/uberon_ppo_import_module.owl"> | ||
| <owl:versionIRI rdf:resource="https://raw.githubusercontent.com/PlantPhenoOntology/ppo/master/releases/2018-10-26/imports/uberon_ppo_import_module.owl"/> | ||
| <dc:source rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2017-05-29/uberon.owl"/> | ||
| </owl:Ontology> | ||
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| <!-- | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| // | ||
| // Annotation properties | ||
| // | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| --> | ||
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| <!-- http://purl.obolibrary.org/obo/IAO_0000115 --> | ||
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| <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://purl.obolibrary.org/obo/IAO_0000116 --> | ||
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| <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IAO:0000116</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> | ||
| <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">editor_note</oboInOwl:id> | ||
| <oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag> | ||
| <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">editor_note</oboInOwl:shorthand> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">editor note</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://purl.obolibrary.org/obo/UBPROP_0000012 --> | ||
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| <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000012"> | ||
| <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Notes on how similar or equivalent classes are represented in other ontologies.</obo:IAO_0000115> | ||
| <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBPROP:0000012</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> | ||
| <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">external_ontology_notes</oboInOwl:id> | ||
| <oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag> | ||
| <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">external_ontology_notes</oboInOwl:shorthand> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">external_ontology_notes</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
| <owl:Axiom> | ||
| <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000012"/> | ||
| <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
| <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Notes on how similar or equivalent classes are represented in other ontologies.</owl:annotatedTarget> | ||
| <oboInOwl:hasDbXref rdf:resource="https://orcid.org/0000-0002-6601-2165"/> | ||
| </owl:Axiom> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#external_ontology --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#external_ontology"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">database_cross_reference</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_narrow_synonym</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_obo_namespace</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_related_synonym</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#id --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#inSubset --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#is_metadata_tag --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_metadata_tag"/> | ||
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| <!-- http://www.geneontology.org/formats/oboInOwl#shorthand --> | ||
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| <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand"> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shorthand</rdfs:label> | ||
| </owl:AnnotationProperty> | ||
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| <!-- | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| // | ||
| // Classes | ||
| // | ||
| /////////////////////////////////////////////////////////////////////////////////////// | ||
| --> | ||
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| <!-- http://purl.obolibrary.org/obo/UBERON_0000000 --> | ||
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| <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000000"> | ||
| <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity.</obo:IAO_0000115> | ||
| <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> | ||
| <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0000000</oboInOwl:id> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#upper_level"/> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">processual entity</rdfs:label> | ||
| </owl:Class> | ||
| <owl:Axiom> | ||
| <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000000"/> | ||
| <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
| <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity.</owl:annotatedTarget> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">span:ProcessualEntity</oboInOwl:hasDbXref> | ||
| </owl:Axiom> | ||
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| <!-- http://purl.obolibrary.org/obo/UBERON_0000071 --> | ||
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| <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000071"> | ||
| <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000105"/> | ||
| <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">End of the life of an organism.</obo:IAO_0000115> | ||
| <obo:UBPROP_0000012 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncit:Death is an outcome</obo:UBPROP_0000012> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XAO:0000437</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XtroDO:0000085</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> | ||
| <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">death</oboInOwl:hasRelatedSynonym> | ||
| <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0000071</oboInOwl:id> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">death stage</rdfs:label> | ||
| </owl:Class> | ||
| <owl:Axiom> | ||
| <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000071"/> | ||
| <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
| <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">End of the life of an organism.</owl:annotatedTarget> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XAO:0000437</oboInOwl:hasDbXref> | ||
| </owl:Axiom> | ||
| <owl:Axiom> | ||
| <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000071"/> | ||
| <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000012"/> | ||
| <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncit:Death is an outcome</owl:annotatedTarget> | ||
| <oboInOwl:external_ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncit</oboInOwl:external_ontology> | ||
| </owl:Axiom> | ||
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| <!-- http://purl.obolibrary.org/obo/UBERON_0000105 --> | ||
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| <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000105"> | ||
| <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000000"/> | ||
| <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A spatiotemporal region encompassing some part of the life cycle of an organism.</obo:IAO_0000115> | ||
| <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">this class represents a proper part of the life cycle of an organism. The class 'life cycle' should not be placed here</obo:IAO_0000116> | ||
| <obo:UBPROP_0000012 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">the WBls class 'all stages' belongs here as it is the superclass of other WBls stages</obo:UBPROP_0000012> | ||
| <obo:UBPROP_0000012 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage</obo:UBPROP_0000012> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BILS:0000105</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EFO:0000399</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBdv:00007012</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:24120</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HsapDv:0000000</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MmusDv:0000000</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OlatDv:0000010</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PdumDv:0000090</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBls:0000002</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XAO:1000000</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFS:0000000</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFS:0100000</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus:Developmental_Stage</oboInOwl:hasDbXref> | ||
| <oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">developmental stage</oboInOwl:hasNarrowSynonym> | ||
| <oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">stage</oboInOwl:hasNarrowSynonym> | ||
| <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> | ||
| <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0000105</oboInOwl:id> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#efo_slim"/> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#upper_level"/> | ||
| <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">life cycle stage</rdfs:label> | ||
| </owl:Class> | ||
| <owl:Axiom> | ||
| <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000105"/> | ||
| <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
| <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A spatiotemporal region encompassing some part of the life cycle of an organism.</owl:annotatedTarget> | ||
| <oboInOwl:hasDbXref rdf:resource="https://orcid.org/0000-0002-6601-2165"/> | ||
| </owl:Axiom> | ||
| </rdf:RDF> | ||
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| <!-- Generated by the OWL API (version 4.2.4) https://github.com/owlcs/owlapi --> | ||
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