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@PhenoMeters

PhenoMeters

Integrative and Predictive Phenome

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  1. harissa harissa Public

    Forked from ulysseherbach/harissa

    Tools for mechanistic gene network inference from single-cell data

    Python

  2. BINGO BINGO Public

    Forked from AtteAalto/BINGO

    MATLAB

  3. kinact kinact Public

    Forked from saezlab/kinact

    Toolbox for Kinase Activity Scoring based on phosphoproteomic data

    Python

  4. phosx phosx Public

    Forked from alussana/phosx

    Kinase activity inference from phosphosproteomics data

    Python

  5. GSEApy GSEApy Public

    Forked from zqfang/GSEApy

    Gene Set Enrichment Analysis in Python

    Python

  6. ptm_hotspots ptm_hotspots Public

    Forked from evocellnet/ptm_hotspots

    Estimate PTM hotspots in protein sequence alignments

    Python

Repositories

Showing 10 of 37 repositories
  • pheno_analysis Public
    PhenoMeters/pheno_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Dec 11, 2024
  • DeepPCT Public Forked from hzau-liulab/DeepPCT

    An integrated framework to predict PTM crosstalk within proteins

    PhenoMeters/DeepPCT’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Nov 22, 2024
  • MassiveFold Public Forked from GBLille/MassiveFold
    PhenoMeters/MassiveFold’s past year of commit activity
    Python 0 10 0 0 Updated Nov 9, 2024
  • rustyms Public Forked from snijderlab/rustyms

    A rust library for parsing Pro Forma peptides and matching them against MS spectra

    PhenoMeters/rustyms’s past year of commit activity
    Rust 0 Apache-2.0 6 0 0 Updated Nov 8, 2024
  • LiP-processing-script Public
    PhenoMeters/LiP-processing-script’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Nov 1, 2024
  • AI2BMD Public Forked from microsoft/AI2BMD

    AI-powered ab initio biomolecular dynamics simulation

    PhenoMeters/AI2BMD’s past year of commit activity
    Python 0 MIT 51 0 0 Updated Oct 17, 2024
  • RoseTTAFold2-PPI Public Forked from CongLabCode/RoseTTAFold2-PPI

    Fast deep learning methods for large-scale protein-protein interaction screening

    PhenoMeters/RoseTTAFold2-PPI’s past year of commit activity
    Python 0 GPL-3.0 7 0 0 Updated Oct 2, 2024
  • ibaqpy Public Forked from bigbio/ibaqpy

    Absolute quantification package based on quantms.io

    PhenoMeters/ibaqpy’s past year of commit activity
    Python 0 MIT 9 0 0 Updated Aug 21, 2024
  • ProteinMPNN Public Forked from dauparas/ProteinMPNN

    Code for the ProteinMPNN paper

    PhenoMeters/ProteinMPNN’s past year of commit activity
    Jupyter Notebook 0 MIT 315 0 0 Updated Aug 14, 2024
  • GSEApy Public Forked from zqfang/GSEApy

    Gene Set Enrichment Analysis in Python

    PhenoMeters/GSEApy’s past year of commit activity
    Python 0 BSD-3-Clause 122 0 0 Updated Aug 5, 2024
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