Dev2 #270
Annotations
10 errors
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples.md:30-34
```@example lmmexample
fm = @formula(response ~ 1 + factor*time + (1 + time|subject&factor))
mm = fit(MixedModel, fm, rds, REML=true)
println(mm) #hide
```
exception =
type FunctionTerm has no field args_parsed
Stacktrace:
[1] getproperty
@ ./Base.jl:37 [inlined]
[2] apply_schema(t::StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}, schema::MixedModels.MultiSchema{StatsModels.FullRank}, Mod::Type{MixedModels.LinearMixedModel})
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/randomeffectsterm.jl:57
[3] _broadcast_getindex_evalf
@ ./broadcast.jl:683 [inlined]
[4] _broadcast_getindex
@ ./broadcast.jl:656 [inlined]
[5] (::Base.Broadcast.var"#31#32"{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}}})(k::Int64)
@ Base.Broadcast ./broadcast.jl:1088
[6] macro expansion
@ ./ntuple.jl:72 [inlined]
[7] ntuple
@ ./ntuple.jl:69 [inlined]
[8] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}})
@ Base.Broadcast ./broadcast.jl:1088
[9] materialize
@ ./broadcast.jl:873 [inlined]
[10] apply_schema(t::Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}, sch::MixedModels.MultiSchema{StatsModels.FullRank}, Ctx::Type)
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:30
[11] apply_schema(t::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}}, schema::StatsModels.Schema, Mod::Type{MixedModels.LinearMixedModel})
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:53
[12] MixedModels.LinearMixedModel(f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}}, tbl::NamedTuple{(:subject, :factor, :time, :response), Tuple{PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, Vector{Float64}, Vector{Float64}}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any})
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:67
[13] LinearMixedModel
@ ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:50 [inlined]
[14] fit(::Type{MixedModels.LinearMixedModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term, StatsModels.InteractionTerm{Tuple{StatsModels.Term, StatsModels.Term}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.FunctionTerm}}}}, tbl::NamedTuple{(:subject, :factor, :time, :response), Tuple{PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, Vector{Float64}, Vector{Float64}}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, verbose::B
|
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../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples.md:53-58
```@example lmmexample
fm2 = @formula(diameter ~ 1 + (1|plate) + (1|sample))
mm = fit(MixedModel, fm2, df, REML=true)
println(mm) #hide
```
exception =
type FunctionTerm has no field args_parsed
Stacktrace:
[1] getproperty
@ ./Base.jl:37 [inlined]
[2] apply_schema(t::StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, schema::MixedModels.MultiSchema{StatsModels.FullRank}, Mod::Type{MixedModels.LinearMixedModel})
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/randomeffectsterm.jl:57
[3] _broadcast_getindex_evalf
@ ./broadcast.jl:683 [inlined]
[4] _broadcast_getindex
@ ./broadcast.jl:656 [inlined]
[5] (::Base.Broadcast.var"#31#32"{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}}})(k::Int64)
@ Base.Broadcast ./broadcast.jl:1088
[6] ntuple
@ ./ntuple.jl:50 [inlined]
[7] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple}, Nothing, typeof(StatsModels.apply_schema), Tuple{Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}, Base.RefValue{MixedModels.MultiSchema{StatsModels.FullRank}}, Base.RefValue{UnionAll}}})
@ Base.Broadcast ./broadcast.jl:1088
[8] materialize
@ ./broadcast.jl:873 [inlined]
[9] apply_schema(t::Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}, sch::MixedModels.MultiSchema{StatsModels.FullRank}, Ctx::Type)
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:30
[10] apply_schema(t::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}}, schema::StatsModels.Schema, Mod::Type{MixedModels.LinearMixedModel})
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/schema.jl:53
[11] MixedModels.LinearMixedModel(f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}}, tbl::NamedTuple{(:Column1, :diameter, :plate, :sample), Tuple{Vector{String}, Vector{Float64}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any})
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:67
[12] LinearMixedModel
@ ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:50 [inlined]
[13] fit(::Type{MixedModels.LinearMixedModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.AbstractTerm}}}}, tbl::NamedTuple{(:Column1, :diameter, :plate, :sample), Tuple{Vector{String}, Vector{Float64}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}, PooledArrays.PooledVector{String, UInt32, Vector{UInt32}}}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, verbose::Bool, REML::Bool)
@ MixedModels ~/.julia/packages/MixedModels/c0jDb/src/linearmixedmodel.jl:194
[14] fit(::Type{MixedModels.LinearMixedModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.FunctionTerm{typeof(|), Vector{StatsModels.Abst
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@setup` block in src/instanduse.md
```@setup lmmexample
ENV["GKSwstype"] = "nul"
using Plots, StatsPlots, CSV, DataFrames, Metida
gr()
Plots.reset_defaults()
rds = CSV.File(joinpath(dirname(pathof(Metida)), "..", "test", "csv", "1fptime.csv"); types = [String, String, Float64, Float64]) |> DataFrame
p = @df rds plot(:time, :response, group = (:subject, :factor), colour = [:red :blue], legend = false)
png(p, "plot1.png")
rds = CSV.File(joinpath(dirname(pathof(Metida)), "..", "test", "csv", "1freparma.csv"); types = [String, String, Float64, Float64]) |> DataFrame
p = @df rds plot(:time, :response, group = (:subject, :factor), colour = [:red :blue], legend = false)
png(p, "plot2.png")
```
exception =
LoadError: ArgumentError: Package Plots not found in current path.
- Run `import Pkg; Pkg.add("Plots")` to install the Plots package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1630 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1611
[4] eval
@ ./boot.jl:370 [inlined]
[5] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:1903
[6] include_string (repeats 2 times)
@ ./loading.jl:1913 [inlined]
[7] #61
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:891 [inlined]
[8] cd(f::Documenter.var"#61#62"{Module, MarkdownAST.CodeBlock}, dir::String)
@ Base.Filesystem ./file.jl:112
[9] runner(#unused#::Type{Documenter.Expanders.SetupBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:890
in expression starting at string:2
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/instanduse.md:39-44
```@example lmmexample
using Metida, CSV, DataFrames, CategoricalArrays
df = CSV.File(joinpath(dirname(pathof(Metida)), "..", "test", "csv", "df0.csv")) |> DataFrame;
nothing # hide
```
exception =
ArgumentError: Package Metida not found in current path, maybe you meant `import/using ..Metida`.
- Otherwise, run `import Pkg; Pkg.add("Metida")` to install the Metida package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1630 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1611
[4] eval
@ ./boot.jl:370 [inlined]
[5] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[6] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[7] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[8] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[9] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[10] with_logger
@ ./logging.jl:626 [inlined]
[11] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[12] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/instanduse.md:51-57
```@example lmmexample
transform!(df, :subject => categorical, renamecols=false)
transform!(df, :period => categorical, renamecols=false)
transform!(df, :sequence => categorical, renamecols=false)
transform!(df, :formulation => categorical, renamecols=false)
nothing # hide
```
exception =
UndefVarError: `categorical` not defined
Stacktrace:
[1] top-level scope
@ instanduse.md:52
[2] eval
@ ./boot.jl:370 [inlined]
[3] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[8] with_logger
@ ./logging.jl:626 [inlined]
[9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/instanduse.md:70-74
```@example lmmexample
lmm = LMM(@formula(var~sequence+period+formulation), df;
random = VarEffect(@covstr(formulation|subject), CSH),
repeated = VarEffect(@covstr(formulation|subject), DIAG));
```
exception =
LoadError: UndefVarError: `@covstr` not defined
Stacktrace:
[1] top-level scope
@ :0
[2] eval
@ ./boot.jl:370 [inlined]
[3] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[8] with_logger
@ ./logging.jl:626 [inlined]
[9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
in expression starting at instanduse.md:72
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/instanduse.md:80-82
```@example lmmexample
fit!(lmm)
```
exception =
UndefVarError: `fit!` not defined
Stacktrace:
[1] top-level scope
@ instanduse.md:81
[2] eval
@ ./boot.jl:370 [inlined]
[3] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[8] with_logger
@ ./logging.jl:626 [inlined]
[9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/instanduse.md:86-88
```@example lmmexample
lmm.log
```
exception =
UndefVarError: `lmm` not defined
Stacktrace:
[1] top-level scope
@ :0
[2] eval
@ ./boot.jl:370 [inlined]
[3] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[8] with_logger
@ ./logging.jl:626 [inlined]
[9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/instanduse.md:95-97
```@example lmmexample
typeiii(lmm)
```
exception =
UndefVarError: `typeiii` not defined
Stacktrace:
[1] top-level scope
@ instanduse.md:96
[2] eval
@ ./boot.jl:370 [inlined]
[3] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[8] with_logger
@ ./logging.jl:626 [inlined]
[9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
|
|
../../../.julia/packages/Documenter/cxHBW/src/utilities/utilities.jl#L44
failed to run `@example` block in src/validation.md:315-319
```@example lmmexample
using Metida; # hide
include(joinpath(dirname(pathof(Metida)), "..", "test", "validation_init.jl")); # hide
include(joinpath(dirname(pathof(Metida)), "..", "test", "validation_s3.jl"))
```
exception =
ArgumentError: Package Metida not found in current path, maybe you meant `import/using ..Metida`.
- Otherwise, run `import Pkg; Pkg.add("Metida")` to install the Metida package.
Stacktrace:
[1] macro expansion
@ ./loading.jl:1630 [inlined]
[2] macro expansion
@ ./lock.jl:267 [inlined]
[3] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1611
[4] eval
@ ./boot.jl:370 [inlined]
[5] #54
@ ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:738 [inlined]
[6] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[7] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:737
[8] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119
[9] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[10] with_logger
@ ./logging.jl:626 [inlined]
[11] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool)
@ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116
[12] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/cxHBW/src/expander_pipeline.jl:736
|
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