Update run.py

xcp_d/cli/run.py

@@ -988,39 +988,7 @@ def build_workflow(opts, retval):
     )
 
     retval["workflow"] = init_xcpd_wf(
-        layout=layout,
-        omp_nthreads=omp_nthreads,
-        fmri_dir=str(opts.fmri_dir),
-        high_pass=opts.lower_bpf,
-        low_pass=opts.upper_bpf,
-        bpf_order=opts.bpf_order,
-        bandpass_filter=opts.bandpass_filter,
-        motion_filter_type=opts.motion_filter_type,
-        motion_filter_order=opts.motion_filter_order,
-        band_stop_min=opts.band_stop_min,
-        band_stop_max=opts.band_stop_max,
         subject_list=subject_list,
-        work_dir=str(opts.work_dir),
-        task_id=opts.task_id,
-        bids_filters=opts.bids_filters,
-        despike=opts.despike,
-        smoothing=opts.smoothing,
-        params=opts.nuisance_regressors,
-        cifti=opts.cifti,
-        analysis_level=opts.analysis_level,
-        output_dir=str(opts.output_dir),
-        head_radius=opts.head_radius,
-        custom_confounds_folder=opts.custom_confounds,
-        dummy_scans=opts.dummy_scans,
-        random_seed=opts.random_seed,
-        fd_thresh=opts.fd_thresh,
-        process_surfaces=opts.process_surfaces,
-        dcan_qc=opts.dcan_qc,
-        input_type=opts.input_type,
-        min_coverage=opts.min_coverage,
-        min_time=opts.min_time,
-        exact_time=opts.exact_time,
-        combineruns=opts.combineruns,
         name="xcpd_wf",
     )