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revise example in README
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cjain7 committed Sep 10, 2020
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Expand Up @@ -64,6 +64,7 @@ Reference = [data/Escherichia_coli_str_K12_MG1655.fna]
Query = [data/Shigella_flexneri_2a_01.fna]
Kmer size = 16
Fragment length = 3000
Threads = 1
ANI output file = fastani.out
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Expand All @@ -78,7 +79,7 @@ $ cat fastani.out
data/Shigella_flexneri_2a_01.fna data/Escherichia_coli_str_K12_MG1655.fna 97.7507 1303 1608
```

Above output implies that the ANI estimate between *S. flexneri* and *E. coli* genomes is 97.7443. Out of the total 1608 sequence fragments from *S. flexneri* genome, 1305 were aligned as orthologous matches.
Above output implies that the ANI estimate between *S. flexneri* and *E. coli* genomes is 97.7507. Out of the total 1608 sequence fragments from *S. flexneri* genome, 1303 were aligned as orthologous matches.

### Visualize Conserved Regions b/w Two Genomes

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