Squashed commit of the following: · PTB-MR/mrpro@8d4fdaa

Commit

Squashed commit of the following:

commit 51aa457
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 11:40:44 2025 +0100

    fix

commit 3d6589a
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 11:36:28 2025 +0100

    lose assert

commit 16a8f21
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 11:22:37 2025 +0100

    assert

commit 0716b42
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 11:08:39 2025 +0100

    assert passes on my pc

commit 6b08e95
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 10:47:34 2025 +0100

    update

commit f1987b1
Merge: a98b9d1 82e58ed
Author: Felix F Zimmermann <[email protected]>
Date:   Mon Jan 20 10:33:22 2025 +0100

    Merge branch 'main' into improvedoc

commit a98b9d1
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 00:32:18 2025 +0100

    update

commit b8ed0ec
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 20 00:28:51 2025 +0100

    update

commit 90d4ccb
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 19 23:56:25 2025 +0100

    Squashed commit of the following:

    commit 82e58ed
    Author: Felix F Zimmermann <[email protected]>
    Date:   Sun Jan 19 23:46:29 2025 +0100

        Fix import in utils (#614)

    commit 8b7ab3d
    Author: Felix F Zimmermann <[email protected]>
    Date:   Thu Jan 16 13:31:28 2025 +0100

        Fix inverse softplus beta (#608)

commit f23103e
Author: Christoph Kolbitsch <[email protected]>
Date:   Fri Jan 17 08:03:22 2025 +0100

    Some more small things (#611)

commit d43c1b2
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 16 13:26:10 2025 +0100

    example update

commit 0b2eee8
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 16 00:25:23 2025 +0100

    cell break

commit 084c07d
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 16 00:18:32 2025 +0100

    some more text

commit 2383efc
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 16 00:03:36 2025 +0100

    fix constraint usage

commit 87802bf
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 23:32:28 2025 +0100

    remove image

commit d848caa
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:52:08 2025 +0100

    notes

commit 8aa5862
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:51:47 2025 +0100

    rotation

commit 1023027
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:42:27 2025 +0100

    update

commit 14be293
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:41:45 2025 +0100

    update

commit c5e4f01
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:37:49 2025 +0100

    fix link

commit 51e7bd8
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:37:40 2025 +0100

    note

commit 9d7dc8d
Merge: 4e5e62b aff63fb
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 16:27:37 2025 +0100

    Merge branch 'main' into improvedoc

commit 4e5e62b
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 15:41:24 2025 +0100

    typo

commit a5bde84
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 15:38:20 2025 +0100

    cartesian sample

commit d9da800
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 13:20:55 2025 +0100

    exclude rst from mege check

commit fea5326
Merge: 6fe9ec8 6685fc9
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 13:19:19 2025 +0100

    Merge branch 'main' into improvedoc

commit 6fe9ec8
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 12:56:38 2025 +0100

    update

commit d4bf1d8
Author: Leonid Lunin <[email protected]>
Date:   Wed Jan 15 12:38:51 2025 +0100

    Add favicon to docs (#605)

commit eeb3ae0
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 12:37:31 2025 +0100

    Squashed commit of the following:

    commit 6685fc9
    Author: Leonid Lunin <[email protected]>
    Date:   Wed Jan 15 11:24:26 2025 +0100

        Update .ipynb notebooks from .py in pre-commit hook locally (#537)

        Co-authored-by: Felix F Zimmermann <[email protected]>

    commit 6cc7ef9
    Author: Felix F Zimmermann <[email protected]>
    Date:   Tue Jan 14 16:19:51 2025 +0100

        Fix WaveletOp (#604)

        fixed problem for computation of gradients

commit 3ad7c37
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 11:16:34 2025 +0100

    calls first

commit ed6f7f9
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 11:15:30 2025 +0100

    update notebooks

commit 8b47125
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 11:15:17 2025 +0100

    fix adjpint as backward docstrings

commit 634d40e
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 10:32:04 2025 +0100

    shorten all references in exmaples

commit 10c8c94
Author: Felix F Zimmermann <[email protected]>
Date:   Wed Jan 15 10:11:08 2025 +0100

    Apply suggestions from code review

    Co-authored-by: Christoph Kolbitsch <[email protected]>

commit 39603ca
Author: lrlunin <[email protected]>
Date:   Wed Jan 15 09:54:27 2025 +0100

    fixed recon svg, increase its size in docs

commit c032e12
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 15 09:38:20 2025 +0100

    update

commit 17b03ea
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 23:45:44 2025 +0100

    fix

commit b8907ca
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 23:45:16 2025 +0100

    fix

commit e6ab0db
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:47:27 2025 +0100

    fix

commit 337a514
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:40:31 2025 +0100

    update readme

commit 2b3faf1
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:36:26 2025 +0100

    update

commit ac37591
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:28:30 2025 +0100

    update

commit 2156518
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:22:28 2025 +0100

    lint

commit 75b7633
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:20:01 2025 +0100

    svg instead of png

commit d0baf78
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 22:15:34 2025 +0100

    update

commit 457787c
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 10:24:09 2025 +0100

    rename

commit 688a55c
Author: Felix F Zimmermann <[email protected]>
Date:   Tue Jan 14 10:17:04 2025 +0100

    Apply suggestions from code review

    Co-authored-by: Christoph Kolbitsch <[email protected]>

commit 4d497e7
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 14 00:11:36 2025 +0100

    update

commit 644cce9
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 22:52:41 2025 +0100

    update

commit 54114aa
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 20:48:16 2025 +0100

     update

commit 3dbd1d6
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 17:06:44 2025 +0100

    update

commit 929aa0d
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 16:11:25 2025 +0100

    update

commit df16dd9
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 16:00:54 2025 +0100

    update

commit 433649e
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 15:35:54 2025 +0100

    update

commit 71943e0
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 13:36:19 2025 +0100

    update

commit 871cdd2
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 13:30:21 2025 +0100

    update

commit 7684724
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 01:54:21 2025 +0100

    update

commit 09c6b97
Merge: 408022b e029d5e
Author: Felix F Zimmermann <[email protected]>
Date:   Mon Jan 13 01:32:34 2025 +0100

    Merge branch 'main' into improvedoc

commit 408022b
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 01:23:13 2025 +0100

    update

commit ba5b484
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 01:14:53 2025 +0100

    update

commit 5311951
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 00:34:30 2025 +0100

    update

commit 8453798
Author: Felix Zimmermann <[email protected]>
Date:   Mon Jan 13 00:19:52 2025 +0100

    update

commit 5d21424
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 22:27:47 2025 +0100

    update

commit f94a177
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 22:13:36 2025 +0100

    update

commit 93ad440
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 21:39:37 2025 +0100

    fix

commit 7cc6587
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 17:16:15 2025 +0100

    Squashed commit of the following:

    commit 51d3dda
    Author: Felix Zimmermann <[email protected]>
    Date:   Sun Jan 12 15:25:48 2025 +0100

        pip install mrpro with notebook option

    commit feabab3
    Author: Felix Zimmermann <[email protected]>
    Date:   Sun Jan 12 15:24:02 2025 +0100

        execute notebooks locally

    commit 8a537d4
    Author: Felix Zimmermann <[email protected]>
    Date:   Sun Jan 12 15:21:48 2025 +0100

        silence jupytext

    commit 36785c4
    Author: lrlunin <[email protected]>
    Date:   Fri Jan 10 13:57:38 2025 +0100

        move cartesion_reconstruction in correct folders

    commit d3b0d1b
    Author: lrlunin <[email protected]>
    Date:   Fri Jan 10 13:54:34 2025 +0100

        run mypy hook as last

    commit b66b9b7
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Jan 9 22:22:38 2025 +0100

        fix notebook_path variable in matrix

    commit 8e2cb8e
    Merge: f450529 a1873a0
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Jan 9 22:20:50 2025 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit f450529
    Author: Felix F Zimmermann <[email protected]>
    Date:   Thu Jan 9 22:15:20 2025 +0100

        changes to leonids pr (#602)

    commit a1873a0
    Author: Lunin Leonid <[email protected]>
    Date:   Wed Jan 8 09:54:12 2025 +0100

        Add dark and light logo to README (#600)

    commit f040c00
    Author: Felix F Zimmermann <[email protected]>
    Date:   Wed Jan 8 00:07:27 2025 +0100

        Release v0.250107 (#599)

    commit 13c4e7e
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 16:24:36 2024 +0100

        fix notebooks_path output

    commit 93ef986
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 16:21:23 2024 +0100

        fix matrix element name

    commit 7eccf87
    Merge: 2d3c3ff 9dc1167
    Author: Lunin Leonid <[email protected]>
    Date:   Wed Dec 18 16:14:30 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit 2d3c3ff
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:46:10 2024 +0100

        remove space after markdown for colab badge

    commit 9a5556d
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:45:25 2024 +0100

        add space after markdown for colab badge

    commit fba5a6f
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:05:55 2024 +0100

        add colab badge for each notebook

    commit 159afed
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 14:17:45 2024 +0100

        update jupytext version

    commit 34d43f0
    Author: lrlunin <[email protected]>
    Date:   Tue Dec 10 13:58:43 2024 +0100

        use find for notebook listing in docs

    commit f76b236
    Author: lrlunin <[email protected]>
    Date:   Tue Dec 10 13:23:29 2024 +0100

        one-way conversion from .py to .ipynb, remove preamble from .py representation

    commit 865347a
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:45:42 2024 +0100

        fixed path for notebooks in examples

    commit 1688c70
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:44:16 2024 +0100

        fixed trigger for jupytext

    commit b9b3a6f
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:40:17 2024 +0100

        split scripts and notebooks

    commit 279a578
    Merge: beddf13 8d24ebb
    Author: Lunin Leonid <[email protected]>
    Date:   Tue Nov 19 21:10:30 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit beddf13
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 21:10:03 2024 +0100

        sync .ipynb/.py in pre-commit, add preamble in .py files

    commit 0600a53
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 18:42:47 2024 +0100

        moved examples ruff config to examples folder, removed verbose from pre-commit hook

    commit 36f3b7a
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 18:25:57 2024 +0100

        fixed missing kernelspec

    commit 4d610c6
    Author: lrlunin <[email protected]>
    Date:   Fri Nov 15 14:23:38 2024 +0100

        also removing metadata.language_info

    commit 48e8080
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 22:45:35 2024 +0100

        clean kernel related information from the cells

    commit f8aa621
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 20:44:13 2024 +0100

        remove mention of convert steps

    commit 534aaa0
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 20:37:43 2024 +0100

        reset cell id

    commit 9f5f2da
    Merge: 74675d6 38722bf
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Nov 14 20:36:21 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit 74675d6
    Merge: ae3a613 c268ad2
    Author: Lunin Leonid <[email protected]>
    Date:   Sun Nov 10 20:50:44 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit ae3a613
    Author: lrlunin <[email protected]>
    Date:   Sun Nov 10 20:50:10 2024 +0100

        reset the cells to init states

    commit 5d1dba2
    Author: lrlunin <[email protected]>
    Date:   Fri Nov 8 16:43:47 2024 +0100

        moved notebooks formatting and update to pre-commit

commit 66a4d4e
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 03:06:49 2025 +0100

    update

commit d4f7fb2
Author: Felix Zimmermann <[email protected]>
Date:   Sun Jan 12 00:54:07 2025 +0100

    update

commit 132637c
Author: Felix Zimmermann <[email protected]>
Date:   Sat Jan 11 02:21:20 2025 +0100

    update

commit 48e3125
Author: Felix Zimmermann <[email protected]>
Date:   Sat Jan 11 01:56:33 2025 +0100

    fix

commit 2571ae3
Author: Felix Zimmermann <[email protected]>
Date:   Sat Jan 11 01:18:52 2025 +0100

    update

commit e51b7c7
Author: Felix Zimmermann <[email protected]>
Date:   Sat Jan 11 00:56:54 2025 +0100

    update

commit 7caf514
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 23:10:45 2025 +0100

    test

commit cfb20b0
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 23:09:53 2025 +0100

    update

commit 7a3cf18
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 22:48:50 2025 +0100

    update

commit 6a5ef6b
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 21:39:42 2025 +0100

    test

commit a26a559
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 16:42:02 2025 +0100

    update

commit 0af3338
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 16:33:42 2025 +0100

    update

commit a72d095
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 16:28:44 2025 +0100

    Squashed commit of the following:

    commit 36785c4
    Author: lrlunin <[email protected]>
    Date:   Fri Jan 10 13:57:38 2025 +0100

        move cartesion_reconstruction in correct folders

    commit d3b0d1b
    Author: lrlunin <[email protected]>
    Date:   Fri Jan 10 13:54:34 2025 +0100

        run mypy hook as last

    commit b66b9b7
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Jan 9 22:22:38 2025 +0100

        fix notebook_path variable in matrix

    commit 8e2cb8e
    Merge: f450529 a1873a0
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Jan 9 22:20:50 2025 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit f450529
    Author: Felix F Zimmermann <[email protected]>
    Date:   Thu Jan 9 22:15:20 2025 +0100

        changes to leonids pr (#602)

    commit a1873a0
    Author: Lunin Leonid <[email protected]>
    Date:   Wed Jan 8 09:54:12 2025 +0100

        Add dark and light logo to README (#600)

    commit f040c00
    Author: Felix F Zimmermann <[email protected]>
    Date:   Wed Jan 8 00:07:27 2025 +0100

        Release v0.250107 (#599)

    commit 13c4e7e
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 16:24:36 2024 +0100

        fix notebooks_path output

    commit 93ef986
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 16:21:23 2024 +0100

        fix matrix element name

    commit 7eccf87
    Merge: 2d3c3ff 9dc1167
    Author: Lunin Leonid <[email protected]>
    Date:   Wed Dec 18 16:14:30 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit 2d3c3ff
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:46:10 2024 +0100

        remove space after markdown for colab badge

    commit 9a5556d
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:45:25 2024 +0100

        add space after markdown for colab badge

    commit fba5a6f
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:05:55 2024 +0100

        add colab badge for each notebook

    commit 159afed
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 14:17:45 2024 +0100

        update jupytext version

    commit 34d43f0
    Author: lrlunin <[email protected]>
    Date:   Tue Dec 10 13:58:43 2024 +0100

        use find for notebook listing in docs

    commit f76b236
    Author: lrlunin <[email protected]>
    Date:   Tue Dec 10 13:23:29 2024 +0100

        one-way conversion from .py to .ipynb, remove preamble from .py representation

    commit 865347a
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:45:42 2024 +0100

        fixed path for notebooks in examples

    commit 1688c70
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:44:16 2024 +0100

        fixed trigger for jupytext

    commit b9b3a6f
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:40:17 2024 +0100

        split scripts and notebooks

    commit 279a578
    Merge: beddf13 8d24ebb
    Author: Lunin Leonid <[email protected]>
    Date:   Tue Nov 19 21:10:30 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit beddf13
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 21:10:03 2024 +0100

        sync .ipynb/.py in pre-commit, add preamble in .py files

    commit 0600a53
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 18:42:47 2024 +0100

        moved examples ruff config to examples folder, removed verbose from pre-commit hook

    commit 36f3b7a
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 18:25:57 2024 +0100

        fixed missing kernelspec

    commit 4d610c6
    Author: lrlunin <[email protected]>
    Date:   Fri Nov 15 14:23:38 2024 +0100

        also removing metadata.language_info

    commit 48e8080
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 22:45:35 2024 +0100

        clean kernel related information from the cells

    commit f8aa621
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 20:44:13 2024 +0100

        remove mention of convert steps

    commit 534aaa0
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 20:37:43 2024 +0100

        reset cell id

    commit 9f5f2da
    Merge: 74675d6 38722bf
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Nov 14 20:36:21 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit 74675d6
    Merge: ae3a613 c268ad2
    Author: Lunin Leonid <[email protected]>
    Date:   Sun Nov 10 20:50:44 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit ae3a613
    Author: lrlunin <[email protected]>
    Date:   Sun Nov 10 20:50:10 2024 +0100

        reset the cells to init states

    commit 5d1dba2
    Author: lrlunin <[email protected]>
    Date:   Fri Nov 8 16:43:47 2024 +0100

        moved notebooks formatting and update to pre-commit

commit 31bf097
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 16:25:58 2025 +0100

    update

commit 47ad68e
Author: Felix Zimmermann <[email protected]>
Date:   Fri Jan 10 16:10:21 2025 +0100

    update

commit a92877b
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 9 00:04:40 2025 +0100

    update

commit f6f0502
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 9 22:08:52 2025 +0100

    Squashed commit of the following:

    commit 399ea3b
    Author: Felix Zimmermann <[email protected]>
    Date:   Thu Jan 9 19:35:48 2025 +0100

        notebools

    commit 9a24e28
    Author: Felix Zimmermann <[email protected]>
    Date:   Thu Jan 9 17:18:08 2025 +0100

        changes to leonids pr

    commit 13c4e7e
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 16:24:36 2024 +0100

        fix notebooks_path output

    commit 93ef986
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 16:21:23 2024 +0100

        fix matrix element name

    commit 7eccf87
    Merge: 2d3c3ff 9dc1167
    Author: Lunin Leonid <[email protected]>
    Date:   Wed Dec 18 16:14:30 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit 2d3c3ff
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:46:10 2024 +0100

        remove space after markdown for colab badge

    commit 9a5556d
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:45:25 2024 +0100

        add space after markdown for colab badge

    commit fba5a6f
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 15:05:55 2024 +0100

        add colab badge for each notebook

    commit 159afed
    Author: lrlunin <[email protected]>
    Date:   Wed Dec 18 14:17:45 2024 +0100

        update jupytext version

    commit 34d43f0
    Author: lrlunin <[email protected]>
    Date:   Tue Dec 10 13:58:43 2024 +0100

        use find for notebook listing in docs

    commit f76b236
    Author: lrlunin <[email protected]>
    Date:   Tue Dec 10 13:23:29 2024 +0100

        one-way conversion from .py to .ipynb, remove preamble from .py representation

    commit 865347a
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:45:42 2024 +0100

        fixed path for notebooks in examples

    commit 1688c70
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:44:16 2024 +0100

        fixed trigger for jupytext

    commit b9b3a6f
    Author: lrlunin <[email protected]>
    Date:   Wed Nov 20 22:40:17 2024 +0100

        split scripts and notebooks

    commit 279a578
    Merge: beddf13 8d24ebb
    Author: Lunin Leonid <[email protected]>
    Date:   Tue Nov 19 21:10:30 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit beddf13
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 21:10:03 2024 +0100

        sync .ipynb/.py in pre-commit, add preamble in .py files

    commit 0600a53
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 18:42:47 2024 +0100

        moved examples ruff config to examples folder, removed verbose from pre-commit hook

    commit 36f3b7a
    Author: lrlunin <[email protected]>
    Date:   Tue Nov 19 18:25:57 2024 +0100

        fixed missing kernelspec

    commit 4d610c6
    Author: lrlunin <[email protected]>
    Date:   Fri Nov 15 14:23:38 2024 +0100

        also removing metadata.language_info

    commit 48e8080
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 22:45:35 2024 +0100

        clean kernel related information from the cells

    commit f8aa621
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 20:44:13 2024 +0100

        remove mention of convert steps

    commit 534aaa0
    Author: lrlunin <[email protected]>
    Date:   Thu Nov 14 20:37:43 2024 +0100

        reset cell id

    commit 9f5f2da
    Merge: 74675d6 38722bf
    Author: Lunin Leonid <[email protected]>
    Date:   Thu Nov 14 20:36:21 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit 74675d6
    Merge: ae3a613 c268ad2
    Author: Lunin Leonid <[email protected]>
    Date:   Sun Nov 10 20:50:44 2024 +0100

        Merge branch 'main' into notebooks-in-pre-commit

    commit ae3a613
    Author: lrlunin <[email protected]>
    Date:   Sun Nov 10 20:50:10 2024 +0100

        reset the cells to init states

    commit 5d1dba2
    Author: lrlunin <[email protected]>
    Date:   Fri Nov 8 16:43:47 2024 +0100

        moved notebooks formatting and update to pre-commit

commit eab0395
Author: Felix Zimmermann <[email protected]>
Date:   Thu Jan 9 17:19:16 2025 +0100

    update

commit df51ecf
Author: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Date:   Wed Jan 8 22:45:42 2025 +0000

    Notebooks updated

commit 6606672
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 8 23:38:59 2025 +0100

    test

commit e00b6a7
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 8 16:52:12 2025 +0100

    test

commit e395218
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 8 16:14:02 2025 +0100

    example

commit 3420fc6
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 8 14:11:03 2025 +0100

    update

commit 466ab3c
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 8 13:44:45 2025 +0100

    update

commit 9d07935
Author: Felix Zimmermann <[email protected]>
Date:   Wed Jan 8 11:46:08 2025 +0100

    update

commit f1e5d1e
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 7 23:09:44 2025 +0100

    update

commit 9f500fb
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 7 03:25:52 2025 +0100

    update

commit f3a6e16
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 7 03:18:55 2025 +0100

    update

commit 4398a11
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 7 03:14:30 2025 +0100

    update

commit 470f1a2
Author: Felix Zimmermann <[email protected]>
Date:   Tue Jan 7 02:48:52 2025 +0100

    improve doc

Loading branch information

fzimmermann89 committed Jan 20, 2025

1 parent 2c598c0 commit 8d4fdaa

.gitignore

Original file line number	Diff line number	Diff line change
Expand Up		@@ -193,3 +193,4 @@ cython_debug/
		*~
		*.swp
		*.swo

.pre-commit-config.yaml

-Original file line number
+Diff line change
@@ Expand Up / @@ -7,6 +7,7 @@ repos: @@
         hooks:
           - id: check-added-large-files
           - id: check-merge-conflict
+            exclude_types: [rst]
           - id: check-yaml
           - id: check-toml
           - id: check-json
@@ Expand Down Expand Up / @@ -68,6 +69,16 @@ repos: @@
            files: ^examples/scripts/.*py
            types_or: [python]
+      - repo: https://github.com/kynan/nbstripout
+        rev: 0.8.0
+        hooks:
+        # cleans the .ipynbs (removes outputs, resets all cell-ids to 0..N, cleans steps)
+        # also clean any kernel information left after execution
+        - id: nbstripout
+          name: clean .ipynb output
+          args: [--extra-keys, "metadata.language_info"]
+          files: examples/notebooks
       - repo: https://github.com/pre-commit/mirrors-mypy
         rev: v1.14.1
         hooks:
@@ Expand All / @@ -88,6 +99,33 @@ repos: @@
               - "--index-url=https://download.pytorch.org/whl/cpu"
               - "--extra-index-url=https://pypi.python.org/simple"
+      - repo: https://github.com/kynan/nbstripout
+        rev: 0.8.0
+        hooks:
+        # cleans the .ipynbs (removes outputs, resets all cell-ids to 0..N, cleans steps)
+        # also clean any kernel information left after execution
+        - id: nbstripout
+          name: clean .ipynb output
+          args: [--extra-keys, "metadata.language_info"]
+          files: examples/notebooks
+      - repo: https://github.com/mwouts/jupytext
+        rev: v1.16.6
+        hooks:
+         - id: jupytext
+           name: convert .py to .ipynb
+           args:
+             - --update
+             - --pipe
+             - "python .precommit/add_notebook_preamble.py {}"
+             - --to
+             - "../notebooks//ipynb"
+             - --update-metadata
+             - '{"accelerator": "GPU","colab": {"gpuType": "T4","provenance": []},"kernelspec": {"display_name": "Python 3 (ipykernel)","language": "python","name": "python3"}}'
+             - examples/scripts/*.py
+           always_run: true
+           pass_filenames: false
     ci:
       autofix_commit_msg: |
         [pre-commit] auto fixes from pre-commit hooks
@@ Expand Down @@

README.md

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -22,7 +22,7 @@ MR image reconstruction and processing package specifically developed for PyTorc
  
    ## Awards

    - 2024 ISMRM QMRI Study Group Challenge, 2nd prize for Relaxometry (T2* and T1)

    - 2024 ISMRM QMRI Study Group Challenge, 2nd prize for Relaxometry ([T2*](https://github.com/PTB-MR/mrpro/blob/8d2133c4a7ce63ac490798c4eb5a70cc1c543646/examples/qmri_sg_challenge_2024_t2_star.ipynb) and [T1](https://github.com/PTB-MR/mrpro/blob/8d2133c4a7ce63ac490798c4eb5a70cc1c543646/examples/qmri_sg_challenge_2024_t1.ipynb))

    ## Main features

docs/source/_static/custom.css

-Original file line number
+Diff line change
@@ Expand Up / @@ -7,3 +7,14 @@ html { @@
     .wy-nav-content {
         max-width: 75% !important;
     }
+    /* new line after each property */
+    dl.py.property {
+        display: block !important;
+    }
+    /* example notebooks outputs */
+    .output>.highlight {
+        background: #efefef !important;
+        color: inherit !important;
+    }

docs/source/_static/encoded_recon_space.png

Binary file not shown.

docs/source/_static/encoded_recon_space.svg

Sorry, something went wrong. Reload?

Sorry, we cannot display this file.

Sorry, this file is invalid so it cannot be displayed.

docs/source/_static/favicon.svg

Sorry, something went wrong. Reload?

Sorry, we cannot display this file.

Sorry, this file is invalid so it cannot be displayed.

docs/source/_static/logo_white.svg

Sorry, something went wrong. Reload?

Sorry, we cannot display this file.

Sorry, this file is invalid so it cannot be displayed.

docs/source/_templates/class_template.rst

-Original file line number
+Diff line change
@@ Expand Up / @@ -4,9 +4,8 @@ @@
     .. autoclass:: {{ objname }}
        :members:
+       :special-members: '__init__, __call__, __matmul__, __add__, __mul__, __or__, __and__, __radd__, __rmul__, __rmatmul__, __ror__, __rand__, __truediv__, __eq__, __pow__'
        :inherited-members: Module
        :show-inheritance:
-       {% block methods %}
-       .. automethod:: __init__
-       {% endblock %}

docs/source/api.rst

-Original file line number
+Diff line change
@@ Expand Up / @@ -2,57 +2,21 @@ API @@
     ===
     This is the MRpro Application Programming Interface (API) documentation.
+    It is designed to assist developers and researchers in understanding and utilizing the core functionalities of MRpro effectively.
+    Each module includes detailed descriptions and function signatures to guide you through their usage.
+    This documentation is generated from the docstrings, which are also available in your IDE.
-    MRpro Algorithms
-    ----------------
+    Navigate through the sections below for more information about each module and its capabilities.
     .. autosummary::
        :toctree: _autosummary
        :template: module_template.rst
        :recursive:
-       mrpro.algorithms
-    MRpro Data
-    ----------
-    .. autosummary::
-       :toctree: _autosummary
-       :template: module_template.rst
-       :recursive:
+       mrpro.algorithms
        mrpro.data
-    MRpro Operators
-    ---------------
-    .. autosummary::
-       :toctree: _autosummary
-       :template: module_template.rst
-       :recursive:
        mrpro.operators
-    MRpro Phantoms
-    --------------
-    .. autosummary::
-       :toctree: _autosummary
-       :template: module_template.rst
-       :recursive:
        mrpro.phantoms
-    MRpro Utilities
-    ---------------
-    .. autosummary::
-       :toctree: _autosummary
-       :template: module_template.rst
-       :recursive:
        mrpro.utils

0 comments on commit `8d4fdaa`

Please sign in to comment.

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Commit

There are no files selected for viewing

0 comments on commit `8d4fdaa`

Commit

There are no files selected for viewing

0 comments on commit 8d4fdaa

0 comments on commit `8d4fdaa`