mGEMS-v1.3.0 (1 February 2023)

Mostly internal changes to accommodate future plans.

Changelog

New features

• Allow reading pseudoalignment files that have been compacted with alignment-writer library. The format is detected automatically.

Build pipeline

• Require c++17.
• Build using relative paths.
• Add alignment-writer and seamat as dependencies.
• Update other dependencies versions.

Internal changes

• Implement BinFromMatrix to bin directly from the probability matrix (allows calling binning in other projects through the mGEMS headers).
• Refactor the code to allow the above.