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mGEMS-v1.2.0 (20 November 2021)
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@tmaklin tmaklin released this 20 Nov 08:34
· 60 commits to master since this release
v1.2.0
adc0ed2

Added compatibility with the changes to Themisto's command line interface and new index file structure in Themisto v2.0.0.

DOI

New feature

Added the -i argument for inputting the mSWEEP group indicators file to mGEMS so that the number of the reference sequences in the pseudoalignment can be determined.

  • If mGEMS can't find the Themisto <=v1.2.0 files in the --themisto-index directory and the -i argument is not supplied, the program will throw an error instructing the user to supply the -i argument.
  • If the files are found, the -i argument is ignored and the program functions as it did previously.

Documentation

  • Updated documentation with usage instructions for both Themisto <=v1.2..0 and >=v2.0.0.
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