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mGEMS-v0.2.0 (8 March 2020)
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@tmaklin tmaklin released this 08 Mar 21:44
· 109 commits to master since this release
v0.2.0
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mGEMS-v0.2.0 (8 March 2020)

Single executable edition.

  • Install dependencies with cmake rather than with git submodules.
  • Sanify the codebase.
  • Create the single mGEMS executable; shorthand for running mGEMS bin (bin the reads) and mGEMS extract (extract bins from a mixed sample).
  • Support working with Themisto files natively.
  • Error checking for input files and directories.
  • Validate number of pseudoalignment targets by requiring the Themisto pseudoalignment index as input instead of --n-refs.
  • Use the functions from telescope natively.
  • Incorporate the rest of the shell commands in the mGEMS codebase.
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