Autodetect tsv or csv format --probs file. #4
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| name: Build binaries | |
| on: | |
| push: | |
| tags: | |
| - "v*.*.*" | |
| branches: | |
| - mgems-release-testing | |
| jobs: | |
| build_linux-x86_64: | |
| runs-on: ubuntu-latest | |
| container: phusion/holy-build-box-64:3.0.2 | |
| steps: | |
| - name: Install wget | |
| id: install-wget | |
| run: yum install -y wget | |
| - name: Create io directory | |
| id: mkdir-io | |
| run: mkdir /io && cd /io | |
| - name: Download build script | |
| id: dl-build-script | |
| run: wget https://raw.githubusercontent.com/tmaklin/biobins/master/linux/mGEMS/build.sh | |
| - name: Compile binary in Holy Build Box container | |
| id: compile-in-container | |
| run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} | |
| - name: Upload linux-x86_64 binary | |
| if: success() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: mGEMS-${{ github.ref_name }}-x86_64-redhat-linux | |
| path: /io/mGEMS-${{ github.ref_name }}-x86_64-redhat-linux.tar.gz | |
| build_macOS-x86_64: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/shepherdjerred/macos-cross-compiler:latest | |
| steps: | |
| - name: Install wget | |
| id: install-wget | |
| run: apt install -y wget | |
| - name: Create io directory | |
| id: mkdir-io | |
| run: mkdir /io && cd /io | |
| - name: Download toolchain file | |
| id: dl-toolchain-file | |
| run: wget https://raw.githubusercontent.com/tmaklin/biobins/master/macOS/x86-64-toolchain.cmake && cp x86-64-toolchain.cmake /io/x86-64-toolchain.cmake && cp x86-64-toolchain.cmake /x86-64-toolchain.cmake | |
| - name: Download build script | |
| id: dl-build-script | |
| run: wget https://raw.githubusercontent.com/tmaklin/biobins/master/macOS/mGEMS/build.sh | |
| - name: Compile binary in macOS Cross Compiler container | |
| id: compile-in-container | |
| run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} x86-64 | |
| - name: Upload macOS-x86_64 binary | |
| if: success() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: mGEMS-${{ github.ref_name }}-x86_64-apple-darwin22 | |
| path: /io/mGEMS-${{ github.ref_name }}-x86_64-apple-darwin22.tar.gz | |
| build_macOS-arm64: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/shepherdjerred/macos-cross-compiler:latest | |
| steps: | |
| - name: Install wget | |
| id: install-wget | |
| run: apt install -y wget | |
| - name: Create io directory | |
| id: mkdir-io | |
| run: mkdir /io && cd /io | |
| - name: Download toolchain file | |
| id: dl-toolchain-file | |
| run: wget https://raw.githubusercontent.com/tmaklin/biobins/master/macOS/arm64-toolchain.cmake && cp arm64-toolchain.cmake /io/arm64-toolchain.cmake && cp arm64-toolchain.cmake /arm64-toolchain.cmake | |
| - name: Download build script | |
| id: dl-build-script | |
| run: wget https://raw.githubusercontent.com/tmaklin/biobins/master/macOS/mGEMS/build.sh | |
| - name: Compile binary in macOS Cross Compiler container | |
| id: compile-in-container | |
| run: chmod +x build.sh && ./build.sh ${{ github.ref_name }} arm64 | |
| - name: Upload macOS-arm64 binary | |
| if: success() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: mGEMS-${{ github.ref_name }}-arm64-apple-darwin22 | |
| path: /io/mGEMS-${{ github.ref_name }}-arm64-apple-darwin22.tar.gz | |
| create-release: | |
| runs-on: ubuntu-latest | |
| needs: [ build_linux-x86_64, build_macOS-x86_64, build_macOS-arm64 ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| path: build | |
| - name: Organise files | |
| shell: bash | |
| run: | | |
| cp build/mGEMS-${{ github.ref_name }}-arm64-apple-darwin22/mGEMS-${{ github.ref_name }}-arm64-apple-darwin22.tar.gz . | |
| cp build/mGEMS-${{ github.ref_name }}-x86_64-apple-darwin22/mGEMS-${{ github.ref_name }}-x86_64-apple-darwin22.tar.gz . | |
| cp build/mGEMS-${{ github.ref_name }}-x86_64-redhat-linux/mGEMS-${{ github.ref_name }}-x86_64-redhat-linux.tar.gz . | |
| - name: Create release | |
| id: create_release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| name: Release ${{ github.ref_name }} | |
| draft: false | |
| prerelease: false | |
| fail_on_unmatched_files: true | |
| generate_release_notes: true | |
| files: | | |
| mGEMS-*.tar.gz |