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Calibration Option for Burden Scores #111

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Calibration Option for Burden Scores #111

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Commits on Jul 15, 2024

  1. add center & scaling feature for burden scores

    @meyerkm
    meyerkm committed Jul 15, 2024
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Commits on Jul 17, 2024

  1. fixup snakemake rule spacing

    @meyerkm
    meyerkm committed Jul 17, 2024
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  2. Add in center_scale_burden option to config generation

    @meyerkm
    meyerkm committed Jul 17, 2024
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  3. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. remove unneeded function argument

    @meyerkm
    meyerkm committed Jul 18, 2024
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  2. Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat … 

    …into score-calibration
    @meyerkm
    meyerkm committed Jul 18, 2024
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  3. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Jul 18, 2024
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Commits on Jul 22, 2024

  1. reduce max computation and set to 1.0

    @meyerkm
    meyerkm committed Jul 22, 2024
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  2. Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat … 

    …into score-calibration
    @meyerkm
    meyerkm committed Jul 22, 2024
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  3. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Jul 22, 2024
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Commits on Aug 20, 2024

  1. move max computation to compute_burdens 

    update agg._burdens to scale all values -1 to 1
    @meyerkm
    meyerkm committed Aug 20, 2024
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  2. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. update default to perform score calibration of burdens

    @meyerkm
    meyerkm committed Aug 21, 2024
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  2. Merge remote-tracking branch 'origin/main' into score-calibration

    @meyerkm
    meyerkm committed Aug 21, 2024
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Commits on Oct 7, 2024

  1. Merge remote-tracking branch 'origin/main' into score-calibration

    @meyerkm
    meyerkm committed Oct 7, 2024
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  2. remove lsf dir

    @meyerkm
    meyerkm committed Oct 7, 2024
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  3. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Oct 7, 2024
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  4. bugfix compute_burdens rule

    @meyerkm
    meyerkm committed Oct 7, 2024
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  5. bugfix

    @meyerkm
    meyerkm committed Oct 7, 2024
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  6. remove skip_burdens from get_burden

    @meyerkm
    meyerkm committed Oct 7, 2024
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  7. bugfix max computation from main branch merge

    @meyerkm
    meyerkm committed Oct 7, 2024
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  8. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Oct 7, 2024
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  9. Merge remote-tracking branch 'origin/main' into score-calibration

    @meyerkm
    meyerkm committed Oct 7, 2024
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Commits on Oct 8, 2024

  1. github action test

    @meyerkm
    meyerkm committed Oct 8, 2024
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  2. specify upload-artifact version

    @meyerkm
    meyerkm committed Oct 8, 2024
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Commits on Oct 9, 2024

  1. Reset default of center_scale_burdens to True

    @meyerkm
    meyerkm committed Oct 9, 2024
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Commits on Oct 14, 2024

  1. remove unused module

    @meyerkm
    meyerkm committed Oct 14, 2024
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  2. remove extra space

    @meyerkm
    meyerkm committed Oct 14, 2024
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  3. remove extra space

    @meyerkm
    meyerkm committed Oct 14, 2024
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  4. add release notes

    @bfclarke
    bfclarke committed Oct 14, 2024
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  5. Merge branch 'score-calibration' of github.com:PMBio/deeprvat into sc… 

    …ore-calibration
    @bfclarke
    bfclarke committed Oct 14, 2024
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Commits on Oct 17, 2024

  1. update scaling function

    @meyerkm
    meyerkm committed Oct 17, 2024
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  2. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Oct 17, 2024
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  3. specify center_scale_burdens option in example configs

    @meyerkm
    meyerkm committed Oct 17, 2024
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Commits on Oct 22, 2024

  1. remove hard-coded annotation length

    @meyerkm
    meyerkm committed Oct 22, 2024
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  2. fixup! Format Python code with psf/black pull_request

    PMBio authored and PMBio committed Oct 22, 2024
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  3. Merge remote-tracking branch 'origin/main' into score-calibration

    @meyerkm
    meyerkm committed Oct 22, 2024
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Commits on Nov 4, 2024

  1. add in center_scale_burdens option from config

    @meyerkm
    meyerkm committed Nov 4, 2024
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  2. Merge remote-tracking branch 'origin/main' into score-calibration

    @meyerkm
    meyerkm committed Nov 4, 2024
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