Code

v2.0.0-alpha.5#244

Code

Merged

nebfield merged 37 commits intomainPGScatalog/pgsc_calc:mainfrom devPGScatalog/pgsc_calc:devCopy head branch name to clipboardMar 19, 2024

+1,744-1,680

Commits

Commits on Feb 2, 2024

• Update base.config

  Show description for 3161c07
  smlmbrt

  authored
  3161c07

Commits on Feb 15, 2024

• Use groovy to parse samplesheets (#243)

  Show description for cc163b7
  nebfield

  authored
  cc163b7

• Update report (renv and include licenses) (#203)

  Show description for d40342d
  nebfield

  authored
  d40342d

Commits on Feb 16, 2024

• keep empty file in assets folder for optional input

  nebfield

  committed
  d071600

Commits on Feb 29, 2024

• Drop aggregation during report generation (#249)

  Show description for ea73f8c
  

  nebfield

  and

  smlmbrt

  authored
  ea73f8c

Commits on Mar 4, 2024

• Fix cache names (#260)

  Show description for d6b0755
  smlmbrt

  authored
  d6b0755

• set pytest version

  nebfield

  committed
  e4fa3b0

• fix node deprecation warnings

  nebfield

  committed
  cf16c0e

• bump pytest-workflow

  nebfield

  committed
  c926dd1

• downgrade pytest

  nebfield

  committed
  4bf8d57

• fix node deprecation warning

  nebfield

  committed
  d815d59

• bump python action again

  nebfield

  committed
  2dfb5fa

• fix tmpdir errors in report

  nebfield

  committed
  255e7b5

• fix --genotypes_cache

  nebfield

  committed
  918c433

• make temporary dir in working directory

  nebfield

  committed
  e5100f5

• fix missing cachedir

  nebfield

  committed
  0859eca

Commits on Mar 5, 2024

• cache relabelled afreq and variants separately

  nebfield

  committed
  91e7547

• oops

  nebfield

  committed
  664a802

• add changelog to docs

  nebfield

  committed
  1578b80

• bump report from dev to production

  nebfield

  committed
  5eefb43

Commits on Mar 6, 2024

• fix report distribution plots for non-ancestry runs

  nebfield

  committed
  75d5c05

Commits on Mar 8, 2024

• Update arm.rst with new profile

  nebfield

  authored
  a6622f1

Commits on Mar 14, 2024

• add deeep cache

  nebfield

  committed
  d2ed086

• stop using wildcards

  nebfield

  committed
  3314592

• swap cross operator -> combine

  nebfield

  committed
  731848f

• set pgscatlaog_utils version to v0.5.2

  nebfield

  committed
  b5634de

• fix log output

  nebfield

  committed
  50bdfdb

Commits on Mar 15, 2024

• fix match_combine cache

  nebfield

  committed
  a4f8fd5

• oops

  nebfield

  committed
  03ad3d7

• fix score aggregation cache

  nebfield

  committed
  6057047

• error if scoring files don't get a calculation result

  nebfield

  committed
  719709c

• update error strategy

  nebfield

  committed
  47616e7

Commits on Mar 18, 2024

• fix missing quarto package

  nebfield

  authored
  a5421cf

• Fix race condition in cache (#262)

  Show description for 6ad412a
  nebfield

  authored
  6ad412a

Commits on Mar 19, 2024

• Add information about versions

  smlmbrt

  committed
  9c3a8ac

• Merge pull request #264 from PGScatalog/docs_version

  Show description for 6d02f21
  smlmbrt

  authored
  6d02f21

• add version to report (#265)

  Show description for ec748b0
  nebfield

  authored
  ec748b0