add version to report (#265)

* add version to report

* update author

assets/report/report.qmd

@@ -1,6 +1,6 @@
 ---
 title: PGS Catalog Calculator (`pgsc_calc`) report
-author: PGS Catalog team
+author: PGS Catalog Calculator (`pgsc_calc`)
 date: today
 title-block-banner: "#383434"
 toc: true
@@ -16,6 +16,7 @@ params:
   sampleset: ""
   run_ancestry: false
   reference_panel_name: ""
+  version: ""
 css: logo.css
 ---
 
@@ -55,12 +56,20 @@ log_df <- Reduce(dplyr::bind_rows, lapply(log_paths, read_log))
 log_df$sampleset <- gsub("_", " ", log_df$sampleset)  # page breaking issues
 ```
 
-# Pipeline command
+# Workflow metadata
+
+## Command
 
 ```{bash}
 cat command.txt | fold -w 80 -s | awk -F ' ' 'NR==1 { print "$", $0} NR>1 { print "    " $0}' | sed 's/$/\\/' | sed '$ s/.$//' 
 ```
 
+## Version
+
+```{r, echo=FALSE}
+message(params$version)
+``` 
+
 # Scoring file metadata
 
 ## Scoring file summary

modules/local/score_report.nf

@@ -35,6 +35,7 @@ process SCORE_REPORT {
     """
     export TMPDIR=\$(mktemp -d --tmpdir=.) # tmpdir must always be writable for quarto
     echo $workflow.commandLine > command.txt
+    
     echo "keep_multiallelic: $params.keep_multiallelic" > params.txt
     echo "keep_ambiguous   : $params.keep_ambiguous"    >> params.txt
     echo "min_overlap      : $params.min_overlap"       >> params.txt
@@ -44,6 +45,7 @@ process SCORE_REPORT {
         -P sampleset:$meta.id \
         -P run_ancestry:$run_ancestry \
         -P reference_panel_name:$reference_panel_name \
+        -P version:$workflow.manifest.version \
         -o report.html
 
     cat <<-END_VERSIONS > versions.yml