fix tmpdir errors in report

PGScatalog · Mar 4, 2024 · 255e7b5 · 255e7b5
1 parent 2dfb5fa
commit 255e7b5
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/local/score_report.nf b/modules/local/score_report.nf
@@ -33,6 +33,7 @@ process SCORE_REPORT {
     def args = task.ext.args ?: ''
     run_ancestry = params.run_ancestry ? true : false
     """
+    export TMPDIR=/tmp # tmpdir must always be writable
     echo $workflow.commandLine > command.txt
     echo "keep_multiallelic: $params.keep_multiallelic" > params.txt
     echo "keep_ambiguous   : $params.keep_ambiguous"    >> params.txt