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swap cross operator -> combine #921

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swap cross operator -> combine

swap cross operator -> combine #921

Triggered via push March 14, 2024 16:53
@nebfieldnebfield
pushed 731848f
dev
Status Cancelled
Total duration 16m 40s
Artifacts 4

ci.yml

on: push
preload_docker  /  docker
4m 23s
preload_docker / docker
preload_singularity  /  singularity
7m 54s
preload_singularity / singularity
preload_ancestry  /  preload_reference
5s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_docker  /  docker
7m 44s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
8m 15s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
7m 55s
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
7m 58s
ancestry_vcf_singularity / singularity
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94 errors and 10 warnings
pytest_workflow_docker (plink2 testmultiscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (test match module) / docker
Process completed with exit code 1.
pytest_workflow_docker (plink2 testsmallscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallscore) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testsmallscore) / docker
Process completed with exit code 1.
pytest_workflow_docker (test match combine module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test match combine module) / docker
Process completed with exit code 1.
pytest_workflow_docker (test match combine module) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test good and bad accessions GRCh38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test good and bad accessions GRCh38) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testscore) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
The operation was canceled.
pytest_workflow_docker (test apply score subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test apply score subworkflow) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test bad accession) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test bad accession) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testrelabelpvar) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testrelabelpvar) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testsmallmultiscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallmultiscore) / docker
The operation was canceled.
pytest_workflow_docker (test perfect apply score) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test perfect apply score) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testrelabelbim) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testrelabelbim) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
The operation was canceled.
pytest_workflow_docker (test combine scorefiles module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test combine scorefiles module) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testmultiscorefail) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testmultiscorefail) / docker
The operation was canceled.
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testmultiscorefail) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with vcf) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testmultiscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testmultiscore) / singularity
The operation was canceled.
pytest_workflow_singularity (plink2 testsmallscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testsmallscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test match combine module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match combine module) / singularity
The operation was canceled.
pytest_workflow_singularity (test match module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with pfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
The operation was canceled.
pytest_workflow_singularity (test combine scorefiles module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test combine scorefiles module) / singularity
The operation was canceled.
pytest_workflow_singularity (test perfect apply score) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test perfect apply score) / singularity
The operation was canceled.
pytest_workflow_singularity (test apply score subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test apply score subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow) / singularity
The operation was canceled.
ancestry_docker / docker
Process completed with exit code 1.
ancestry_vcf_docker / docker
Process completed with exit code 1.
ancestry_singularity / singularity
Process completed with exit code 1.
ancestry_vcf_singularity / singularity
Process completed with exit code 1.
pytest_workflow_docker (plink2 testmultiscore) / docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest_workflow_docker (plink2 testmultiscore) / docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest_workflow_docker (test match module) / docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest_workflow_docker (test match module) / docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ancestry_docker / docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ancestry_vcf_docker / docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ancestry_singularity / singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ancestry_vcf_singularity / singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
logs-docker-plink2 testmultiscore Expired
2.62 MB
logs-docker-test match module Expired
1.98 MB
logs-singularity-ancestry Expired
5.77 GB
logs-singularity-plink2 testsmallmultiscore Expired
2.62 MB