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2.0.0 release #1178

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2.0.0 release

2.0.0 release #1178

Triggered via pull request October 10, 2024 09:32
@nebfieldnebfield
synchronize #382
integrate-utils-1.4.1
Status Cancelled
Total duration 12m 28s
Artifacts 5

ci.yml

on: pull_request
preload_docker  /  docker
3m 42s
preload_docker / docker
preload_singularity  /  singularity
1m 15s
preload_singularity / singularity
preload_ancestry  /  preload_reference
5s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_docker  /  docker
7m 54s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
8m 26s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
7m 39s
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
8m 3s
ancestry_vcf_singularity / singularity
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68 errors
pytest_workflow_singularity (test input check subworkflow with liftover 38to37) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test match combine module) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testrelabelbim) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with liftover 37to38) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testrelabelpvar) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testsmallmultiscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test good and bad accessions GRCh38) / singularity
The operation was canceled.
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test make compatible subworkflow with bfile) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --pgs_id) / singularity
The operation was canceled.
pytest_workflow_singularity (test match module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test match module) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (test combine scorefiles module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test combine scorefiles module) / singularity
The operation was canceled.
pytest_workflow_singularity (test apply score subworkflow) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test apply score subworkflow) / singularity
The operation was canceled.
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (pgscatalog test --efo_trait --pgp_id and --pgs_id) / singularity
The operation was canceled.
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test input check subworkflow with PGS catalog API and whitespace) / singularity
The operation was canceled.
pytest_workflow_singularity (test perfect apply score) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test perfect apply score) / singularity
The operation was canceled.
pytest_workflow_docker (pgscatalog test --pgs_id) / docker
Process completed with exit code 1.
pytest_workflow_docker (test match module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test match module) / docker
Process completed with exit code 1.
pytest_workflow_docker (test make compatible subworkflow with bfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallmultiscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testmultiscorefail) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with vcf) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testrelabelbim) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testrelabelbim) / docker
The operation was canceled.
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test make compatible subworkflow with pfile) / docker
The operation was canceled.
pytest_workflow_docker (plink2 vcf) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 vcf) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test bad accession) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test bad accession) / docker
The operation was canceled.
pytest_workflow_docker (test perfect apply score) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test perfect apply score) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 38to37) / docker
The operation was canceled.
pytest_workflow_docker (test match combine module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test match combine module) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testmultiscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testmultiscore) / docker
The operation was canceled.
pytest_workflow_docker (plink2 testsmallscore) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (plink2 testsmallscore) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
The operation was canceled.
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with liftover 37to38) / docker
The operation was canceled.
pytest_workflow_docker (test combine scorefiles module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test combine scorefiles module) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (test apply score subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test apply score subworkflow) / docker
The operation was canceled.

Artifacts

Produced during runtime
Name Size
logs-docker-pgscatalog test --pgs_id
4.55 KB
logs-docker-test match module
773 KB
logs-singularity-test input check subworkflow with liftover 37to38
2.82 MB
logs-singularity-test input check subworkflow with liftover 38to37
2.82 MB
logs-singularity-test match combine module
838 KB