Fix stable documentation build (#1970)

### What kind of change does this PR introduce?

* Adds a few missing dependencies to the `environment.yml
* Synchronizes a few dependencies between `pyproject.toml` and
`environment.yml`
* Updates the pre-commit hook versions

### Does this PR introduce a breaking change?

No.

### Other information:

This should be followed with a patch fix release, as the stable
documentation is not rendering at the moment.

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ default_language_version:
 
 repos:
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.17.0
+    rev: v3.18.0
     hooks:
       - id: pyupgrade
         args: ['--py39-plus']
@@ -37,7 +37,7 @@ repos:
     hooks:
       - id: black
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.9
+    rev: v0.7.0
     hooks:
       - id: ruff
         args: [ '--fix', '--show-fixes' ]
@@ -61,9 +61,9 @@ repos:
     hooks:
       - id: nbqa-pyupgrade
         args: [ '--py39-plus' ]
-        additional_dependencies: [ 'pyupgrade==3.16.0' ]
+        additional_dependencies: [ 'pyupgrade==3.18.0' ]
       - id: nbqa-black
-        additional_dependencies: [ 'black==24.4.2' ]
+        additional_dependencies: [ 'black==24.10.0' ]
   - repo: https://github.com/kynan/nbstripout
     rev: 0.7.1
     hooks:
@@ -82,7 +82,7 @@ repos:
       - id: rst-inline-touching-normal
       - id: text-unicode-replacement-char
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.17
+    rev: 0.7.18
     hooks:
       - id: mdformat
         exclude: '.github/\w+.md|.github/publish-mastodon-template.md|docs/paper/paper.md'
@@ -99,11 +99,11 @@ repos:
       - id: codespell
         additional_dependencies: [ 'tomli' ]
   - repo: https://github.com/gitleaks/gitleaks
-    rev: v8.20.1
+    rev: v8.21.1
     hooks:
       - id: gitleaks
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.29.3
+    rev: 0.29.4
     hooks:
       - id: check-github-workflows
       - id: check-readthedocs

.readthedocs.yml

@@ -27,6 +27,7 @@ python:
       path: .
       extra_requirements:
         - dev
+        - extras
 
 search:
   ranking:

CHANGELOG.rst

@@ -2,6 +2,14 @@
 Changelog
 =========
 
+v0.53.1 (2024-10-21)
+--------------------
+Contributors to this version: Trevor James Smith (:user:`Zeitsperre`).
+
+Internal changes
+^^^^^^^^^^^^^^^^
+* Fixed a few missing dependencies in the documentation build recipe that were causing errors in the CI workflow on ReadTheDocs. (:pull:`1970`).
+
 v0.53.0 (2024-10-17)
 --------------------
 Contributors to this version: Adrien Lamarche (:user:`LamAdr`), Trevor James Smith (:user:`Zeitsperre`), Éric Dupuis (:user:`coxipi`), Pascal Bourgault (:user:`aulemahal`), Sascha Hofmann (:user:`saschahofmann`), David Huard (:user:`huard`).

environment.yml

@@ -11,7 +11,6 @@ dependencies:
   - click >=8.1
   - dask >=2.6.0
   - filelock >=3.14.0
-  - flox >= 0.9
   - jsonpickle >=3.1.0
   - numba >=0.54.1
   - numpy >=1.23.0
@@ -26,17 +25,19 @@ dependencies:
   - xarray >=2023.11.0
   - yamale >=5.0.0
   # Extras
-  - flox
-  - lmoments3  # Required for some Jupyter notebooks
+  - fastnanquantile >=0.0.2
+  - flox >=0.9
+  - lmoments3 >=1.0.7  # Required for some Jupyter notebooks
+  - pot >=0.9.4
   # Testing and development dependencies
-  - black ==24.8.0
+  - black ==24.10.0
   - blackdoc ==0.3.9
-  - bump-my-version >=0.25.4
+  - bump-my-version >=0.27.0
   - cairosvg
   - codespell ==2.3.0
   - coverage >=7.5.0
   - coveralls >=4.0.1  # Note: coveralls is not yet compatible with Python 3.13
-  - deptry ==0.18.0
+  - deptry ==0.20.0
   - distributed >=2.0
   - flake8 >=7.1.1
   - flake8-rst-docstrings >=0.3.0
@@ -59,7 +60,7 @@ dependencies:
   - pooch >=1.8.0
   - pre-commit >=3.7
   - pybtex >=0.24.0
-  - pylint >=3.1
+  - pylint >=3.3.1
   - pytest >=8.0.0
   - pytest-cov >=5.0.0
   - pytest-socket >=0.6.0
@@ -73,9 +74,9 @@ dependencies:
   - sphinx-mdinclude
   - sphinxcontrib-bibtex
   - tokenize-rt >=5.2.0
-  - tox >=4.18.1
-  # - tox-conda  # Will be added when a [email protected]+ compatible plugin is released.
-  - vulture ==2.11
+  - tox >=4.21.2
+  - tox-gh >=1.4.4
+  - vulture ==2.13
   - xdoctest >=1.1.5
   - yamllint >=1.35.1
   - pip >=24.2.0

pyproject.toml

@@ -79,15 +79,15 @@ dev = [
   "pip >=24.2.0",
   "pooch >=1.8.0",
   "pre-commit >=3.7",
-  "pylint >=3.2.4",
+  "pylint >=3.3.1",
   "pytest >=8.0.0",
   "pytest-cov >=5.0.0",
   "pytest-socket >=0.6.0",
   "pytest-xdist[psutil] >=3.2",
   "ruff >=0.5.6",
   "tokenize-rt >=5.2.0",
-  "tox >=4.18.1",
-  # "tox-conda",  # Will be added when a [email protected]+ compatible plugin is released.
+  "tox >=4.21.2",
+  "tox-gh >=1.4.4",
   "vulture ==2.13",
   "xdoctest >=1.1.5",
   "yamllint ==1.35.1"
@@ -135,7 +135,7 @@ target-version = [
 ]
 
 [tool.bumpversion]
-current_version = "0.53.0"
+current_version = "0.53.1"
 commit = true
 commit_args = "--no-verify"
 tag = false

xclim/__init__.py

@@ -13,7 +13,7 @@
 
 __author__ = """Travis Logan"""
 __email__ = "[email protected]"
-__version__ = "0.53.0"
+__version__ = "0.53.1"
 
 
 with _resources.as_file(_resources.files("xclim.data")) as _module_data: