More generic generic.stats - Allow 3H inputs (#1498)
#5161
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: xclim Testing Suite | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths-ignore: | |
| - CHANGES.rst | |
| - README.rst | |
| - pyproject.toml | |
| - setup.cfg | |
| - xclim/__init__.py | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| pull_request_review: | |
| types: | |
| - submitted | |
| env: | |
| XCLIM_TESTDATA_BRANCH: v2023.9.12 | |
| concurrency: | |
| # For a given workflow, if we push to the same branch, cancel all previous builds on that branch except on master. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/master' }} | |
| jobs: | |
| lint: | |
| name: Black (Python${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| if: | | |
| ((github.event_name == 'pull_request') && (github.event.action != 'labeled')) || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install pylint and tox | |
| run: pip install pylint tox~=4.0 | |
| - name: Run pylint | |
| run: pylint --rcfile=pylintrc --disable=import-error --exit-zero xclim | |
| - name: Run linting suite | |
| run: tox -e lint | |
| test-py39: | |
| name: test-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
| needs: lint | |
| if: | | |
| (github.event_name == 'pull_request') && !contains(github.event.pull_request.labels.*.name, 'approved') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: "py39" | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: | | |
| pip install tox~=4.0 | |
| - name: Test with tox | |
| run: | | |
| tox -e ${{ matrix.tox-env }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: run-{{ matrix.tox-env }} | |
| COVERALLS_SERVICE_NAME: github | |
| test-pypi: | |
| needs: lint | |
| name: test-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: py38-coverage-eofs | |
| python-version: "3.8" | |
| markers: -m 'not slow' | |
| - tox-env: py39-coverage-sbck-eofs | |
| python-version: "3.9" | |
| markers: -m 'not slow' | |
| - tox-env: py310-coverage # No markers -- includes slow tests | |
| python-version: "3.10" | |
| - tox-env: py311-coverage-sbck | |
| python-version: "3.11" | |
| markers: -m 'not slow' | |
| - tox-env: notebooks_doctests | |
| python-version: "3.10" | |
| - tox-env: offline-prefetch | |
| python-version: "3.11" | |
| markers: -m 'not slow and not requires_internet' | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Install Eigen3 | |
| if: contains(matrix.tox-env, 'sbck') | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libeigen3-dev | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: | | |
| pip install tox~=4.0 | |
| - name: Test with tox | |
| run: | | |
| tox -e ${{ matrix.tox-env }} -- ${{ matrix.markers }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: run-{{ matrix.tox-env }} | |
| COVERALLS_PARALLEL: true | |
| COVERALLS_SERVICE_NAME: github | |
| test-conda: | |
| needs: lint | |
| name: test-conda-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: py310 | |
| python-version: "3.10" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/[email protected] | |
| with: | |
| cache-downloads: true | |
| cache-environment: true | |
| environment-file: environment.yml | |
| create-args: >- | |
| conda | |
| python=${{ matrix.python-version }} | |
| - name: Conda and Mamba versions | |
| run: | | |
| conda --version | |
| echo "micromamba: $(micromamba --version)" | |
| - name: Install xclim | |
| run: | | |
| python -m pip install --no-user --editable . | |
| - name: Check versions | |
| run: | | |
| conda list | |
| xclim show_version_info | |
| pip check | |
| - name: Test with pytest | |
| run: | | |
| pytest --numprocesses=logical --durations=10 --cov=xclim --cov-report=term-missing | |
| # - name: Install tox | |
| # shell: bash -l {0} | |
| # run: | | |
| # mamba install -n xclim39 tox tox-conda | |
| # - name: Test | |
| # shell: bash -l {0} | |
| # run: | | |
| # conda activate xclim39 | |
| # tox -e opt-slow | |
| # env: | |
| # CONDA_EXE: mamba | |
| # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Report coverage | |
| run: | | |
| pip install --upgrade coveralls | |
| coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: run-{{ matrix.tox-env }}-opt-slow | |
| COVERALLS_PARALLEL: true | |
| COVERALLS_SERVICE_NAME: github | |
| finish: | |
| needs: | |
| - test-pypi | |
| - test-conda | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Coveralls Finished | |
| run: | | |
| pip install --upgrade coveralls | |
| coveralls --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_SERVICE_NAME: github |