More generic generic.stats
- Allow 3H inputs (#1498)
#5161
Workflow file for this run
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name: xclim Testing Suite | |
on: | |
push: | |
branches: | |
- master | |
paths-ignore: | |
- CHANGES.rst | |
- README.rst | |
- pyproject.toml | |
- setup.cfg | |
- xclim/__init__.py | |
pull_request: | |
types: | |
- opened | |
- reopened | |
- synchronize | |
pull_request_review: | |
types: | |
- submitted | |
env: | |
XCLIM_TESTDATA_BRANCH: v2023.9.12 | |
concurrency: | |
# For a given workflow, if we push to the same branch, cancel all previous builds on that branch except on master. | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: ${{ github.ref != 'refs/heads/master' }} | |
jobs: | |
lint: | |
name: Black (Python${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
if: | | |
((github.event_name == 'pull_request') && (github.event.action != 'labeled')) || | |
(github.event.review.state == 'approved') || | |
(github.event_name == 'push') | |
strategy: | |
matrix: | |
python-version: | |
- "3.8" | |
steps: | |
- uses: actions/[email protected] | |
- name: Set up Python${{ matrix.python-version }} | |
uses: actions/[email protected] | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install pylint and tox | |
run: pip install pylint tox~=4.0 | |
- name: Run pylint | |
run: pylint --rcfile=pylintrc --disable=import-error --exit-zero xclim | |
- name: Run linting suite | |
run: tox -e lint | |
test-py39: | |
name: test-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
needs: lint | |
if: | | |
(github.event_name == 'pull_request') && !contains(github.event.pull_request.labels.*.name, 'approved') | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
include: | |
- tox-env: "py39" | |
python-version: "3.9" | |
steps: | |
- uses: actions/[email protected] | |
- name: Set up Python${{ matrix.python-version }} | |
uses: actions/[email protected] | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install tox | |
run: | | |
pip install tox~=4.0 | |
- name: Test with tox | |
run: | | |
tox -e ${{ matrix.tox-env }} | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: run-{{ matrix.tox-env }} | |
COVERALLS_SERVICE_NAME: github | |
test-pypi: | |
needs: lint | |
name: test-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
if: | | |
contains(github.event.pull_request.labels.*.name, 'approved') || | |
(github.event.review.state == 'approved') || | |
(github.event_name == 'push') | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
include: | |
- tox-env: py38-coverage-eofs | |
python-version: "3.8" | |
markers: -m 'not slow' | |
- tox-env: py39-coverage-sbck-eofs | |
python-version: "3.9" | |
markers: -m 'not slow' | |
- tox-env: py310-coverage # No markers -- includes slow tests | |
python-version: "3.10" | |
- tox-env: py311-coverage-sbck | |
python-version: "3.11" | |
markers: -m 'not slow' | |
- tox-env: notebooks_doctests | |
python-version: "3.10" | |
- tox-env: offline-prefetch | |
python-version: "3.11" | |
markers: -m 'not slow and not requires_internet' | |
steps: | |
- uses: actions/[email protected] | |
- name: Install Eigen3 | |
if: contains(matrix.tox-env, 'sbck') | |
run: | | |
sudo apt-get update | |
sudo apt-get install libeigen3-dev | |
- name: Set up Python${{ matrix.python-version }} | |
uses: actions/[email protected] | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install tox | |
run: | | |
pip install tox~=4.0 | |
- name: Test with tox | |
run: | | |
tox -e ${{ matrix.tox-env }} -- ${{ matrix.markers }} | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: run-{{ matrix.tox-env }} | |
COVERALLS_PARALLEL: true | |
COVERALLS_SERVICE_NAME: github | |
test-conda: | |
needs: lint | |
name: test-conda-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
if: | | |
contains(github.event.pull_request.labels.*.name, 'approved') || | |
(github.event.review.state == 'approved') || | |
(github.event_name == 'push') | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
include: | |
- tox-env: py310 | |
python-version: "3.10" | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/[email protected] | |
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
uses: mamba-org/[email protected] | |
with: | |
cache-downloads: true | |
cache-environment: true | |
environment-file: environment.yml | |
create-args: >- | |
conda | |
python=${{ matrix.python-version }} | |
- name: Conda and Mamba versions | |
run: | | |
conda --version | |
echo "micromamba: $(micromamba --version)" | |
- name: Install xclim | |
run: | | |
python -m pip install --no-user --editable . | |
- name: Check versions | |
run: | | |
conda list | |
xclim show_version_info | |
pip check | |
- name: Test with pytest | |
run: | | |
pytest --numprocesses=logical --durations=10 --cov=xclim --cov-report=term-missing | |
# - name: Install tox | |
# shell: bash -l {0} | |
# run: | | |
# mamba install -n xclim39 tox tox-conda | |
# - name: Test | |
# shell: bash -l {0} | |
# run: | | |
# conda activate xclim39 | |
# tox -e opt-slow | |
# env: | |
# CONDA_EXE: mamba | |
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Report coverage | |
run: | | |
pip install --upgrade coveralls | |
coveralls | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: run-{{ matrix.tox-env }}-opt-slow | |
COVERALLS_PARALLEL: true | |
COVERALLS_SERVICE_NAME: github | |
finish: | |
needs: | |
- test-pypi | |
- test-conda | |
runs-on: ubuntu-latest | |
container: python:3-slim | |
steps: | |
- name: Coveralls Finished | |
run: | | |
pip install --upgrade coveralls | |
coveralls --finish | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_SERVICE_NAME: github |