Update nPhasePipelineFunctions.py

OmarOakheart · Jul 29, 2020 · 38876c5 · 38876c5
1 parent 3f3fca5
commit 38876c5
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/build/lib/bin/nPhasePipelineFunctions.py b/build/lib/bin/nPhasePipelineFunctions.py
@@ -231,11 +231,11 @@ def assignLongReadToSNPs(samPath,bedPath,referencePath,minQ,minMQ,minAln,outputP
         matchStart=False
         averageScore=0
         for Q in QLine:
-	    try:
+            try:
+                averageScore+=QScores[Q]
+            except:
+                QScores[Q]=ord(Q)-33
                 averageScore+=QScores[Q]
-	    except:
-		QScores[Q]=ord(Q)-33
-		averageScore+=QScores[Q]
         averageScore=int(averageScore/len(QLine))
         #
         #Okay so now we evaluate the cigar string and just slide down the SEQ and the reference simultaneously